1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tggaacaagattaatgccttttagtgtaaccagtcaggcactaaataaatttgagactcattttcgtagaactgaaatgagttgctctatcatttttcagTGCAGTAGATCATTTTAAAAAGCAGTTTGCATACCTTGAAGAACATTATGCCAAGGGATCTACAGGAACTCCACCTGAGAGGCAACATAATTCATTGCCG
species | Zea mays |
transcript | GRMZM2G089484_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATGTACCCAAG TGCAGTAGATCATTTTAAAAAGCAGTTTGCATACCTTGAAGAACATTATGCEST: gi|211150023|gb|FL261061.1|FL261061
genomic: CATGTACCCAAGgtgtgtgcat ... catttttcagTGCAGTAGATCATTTTAAAAAGCAGTTTGCATACCTTGAAGAACATTATGC
EST: TGAGGGAGTTTCTTGAGGGAAACTGAGTCAAGTGGTTTCATGTACCCAAG TGCAGTAGATCATTTTAAAAAGCAGTTTGCATACCTTGAAGAAACATTATGEST: gi|71763203|gb|DR961140.1|DR961140
genomic: TGAGGGAGTTTCTTGAGGGAA-CTGAGTCAAGTGGTTTCATGTACCCAAGgtgtgtgcat ... catttttcagTGCAGTAGATCATTTTAAAAAGCAGTTTGCATACCTTGAAGAA-CATTATG
EST: CATGTACCCAAG TGCAGTAGATCATTTTAAAAAGCAGTTTGCATACC-TGAAAGAACATTATGEST: gi|9742842|gb|BE518990.1|BE518990
genomic: CATGTACCCAAGgtgtgtgcat ... catttttcagTGCAGTAGATCATTTTAAAAAGCAGTTTGCATACCTTG-AAGAACATTATG
EST: CTGAGGGAGTTTCTTGAGGGAACTGAGTCAAGTGG-TTCATGTACCCAAG TGCAGTAGATCATTCTAAAAAGCAGTTTGCATACCTTGAAGAACATTATGC
genomic: CTGAGGGAGTTTCTTGAGGGAACTGAGTCAAGTGGTTTCATGTACCCAAGgtgtgtgcat ... catttttcagTGCAGTAGATCATTTTAAAAAGCAGTTTGCATACCTTGAAGAACATTATGC
taaatttgagactcattttcgtagaactgaaatgagttgctctatcatttttcagTGCAGTAGATCATTTTAAAAAGCAGTTTGCATACCTTGAAGAACATTATGCCAAGGGATCTACAGGAACTCCACCTGAGAGGCAACATAATTCATTGCCG
ctctatcatttttc CT-rich tract
tatcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaacaagattaatgccttttagtgtaaccagtcaggcactaaataaatttgagactcattttcgtagaactgaaatgagttgctctatcatttttcagTGCAGTAGATCATTTTAAAAAGCAGTTTGCATACCTTGAAGAACATTATGCCAAGGGATCTACAGGAACTCCACCTGAGAGGCAACATAATTCATTGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- -aacaaga
- - - - - - - tgccttt
- - - - - - - - - - - - - - - - - caggcac
- - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgctc