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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatcttacatgtcatactcttttatcgaaaaaggctaaattctaattctctacctatccttgtaactgaacttggatgggttttgtggtatcagGTGTTGAAAAGGGATACGGCCTTGGCAACTGCAGCAATTTACCAGTCAATGTTTGGGTTAGAAGACGGATCTATTCCAGCAACCTTTCAA

Basic information

species Zea mays
transcript GRMZM2G087692_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G087692_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os12g10200.1 (Oryza sativa), 3'ss of exon 6
gtgagtatcttacatgtcatactcttttatcgaaaaaggctaaattctaattctctacctatccttgtaactgaacttggatgggttttgtggtatcagGTGTTGAAAAGGGATACGGCCTTGGCAACTGCAGCAATTTACCAGTCAATGTTTGGGTTAGAAGACGGATCTATTCCAGCAACCTTTCAA----------
|||||||| ||| |     ||||  |  |   ||| |||  ||||||||||||      ||  |  |||  |||  ||| |||  ||| ||   ||||| | || || |  ||||| || ||||||||||| || ||||||||||||||||||||| ||||||| ||| || ||||||||||||||||           
gtgagtatattata----gtacttgtcaaat-aaataggtcaaattctaattca-----tactcaggtatttgattttgtatgtattt-gtataatcagATATTAAAGAAAGATACAGCTTTGGCAACTGCGGCCATTTACCAGTCAATGTTTGGGCTAGAAGATGGAACTGTTCCAGCAACCTTTCAGGTTTTGTAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaattctctacctatccttgtaactgaacttggatgggttttgtggtatcagGTGTTGAAAAGGGATACGGCCTTGGCAACTGCAGCAATTTACCAGTCAATGTTTGGGTTAGAAGACGGATCTATTCCAGCAACCTTTCAA
                    ttgtaac  putative branch site (score: 2)