1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atgtactaatattttattgcatctgctctgagaactgagtcctgaccacctcacagtttttgaccaagtattttttttgcaaaaacatgtctatgtgcagGGGCAATTATCTTCCTGCTGACCAGTACTTGAATCATGCTGAGAAGTCAGACATGACTATTGTGGAAGCTTTCAAAAGGATGCAGGTTGTTCAGCATGAG
species | Zea mays |
transcript | GRMZM2G086015_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGTGTTGCGTCTCAGAG GGGCAATTATCTTCCTGCTGACCAGTACTTGAATCATGCTGAGAAGTCAGAEST: gi|160481598|gb|EY254430.1|EY254430
genomic: GAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGTGTTGCGTCTCAGAGgtacacagta ... ctatgtgcagGGGCAATTATCTTCCTGCTGACCAGTACTTGAATCATGCTGAGAAGTCAGA
EST: GAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGTGTTGCGTCTCAGAG GGGAAATTATCTTCCTGGCTGACCAEST: gi|67024352|gb|CO453101.1|CO453101
genomic: GAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGTGTTGCGTCTCAGAGgtacacagta ... ctatgtgcagGGGCAATTATCTTCCTG-CTGACCA
EST: GAAGACTGGCAGGTTGCTCTAACTGTAGAAAAA-GTGTTGCGTCTCAGAG GG-CAATTATC
genomic: GAAGACTGGCAGGTTGCTCTAACTGTAGAAAAAAGTGTTGCGTCTCAGAGgtacacagta ... ctatgtgcagGGGCAATTATC
ccacctcacagtttttgaccaagtattttttttgcaaaaacatgtctatgtgcagGGGCAATTATCTTCCTGCTGACCAGTACTTGAATCATGCTGAGAAGTCAGACATGACTATTGTGGAAGCTTTCAAAAGGATGCAGGTTGTTCAGCATGAG
ttttgac putative branch site (score: 81)
tattttttttgcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtactaatattttattgcatctgctctgagaactgagtcctgaccacctcacagtttttgaccaagtattttttttgcaaaaacatgtctatgtgcagGGGCAATTATCTTCCTGCTGACCAGTACTTGAATCATGCTGAGAAGTCAGACATGACTATTGTGGAAGCTTTCAAAAGGATGCAGGTTGTTCAGCATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - gcatctg
- - - - - - - - - - - - - - - - - - - - - -gaccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaca