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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttctttgcgttccttacaaataatttgtaccacactaggggcttcccctactattttcgctcaaaatactgctccctttctgaagtgataaaatcacagTTTGAAGACTTCCAAATGAAATGGGCCTTTGAGACTCTTCAGAGGTATCGGAACCGATTTTGCATGTTCAATGATGACGTACAG

Basic information

species Zea mays
transcript GRMZM2G085747_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085747_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os10g35960.2 (Oryza sativa), 3'ss of exon 7
cttctttgcgttccttacaaataatttgtaccacactaggggcttcccctactattttcgctcaaaatactgctccctttctgaagtgataaaatcacagTTTGAAGACTTCCAAATGAAATGGGCCTTTGAGACTCTTCAGAGGTATCGGAACCGATTTTGCATGTTCAATGATGACGTACAG
                        || || | ||  |  ||   |    |  ||  |   |   || |  ||| || || |||||||  |||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
-----------------------gttcgtgc-actttctggtaatgttttgttacctaacc---aagtgatgcaccattactgaagttgtaaagttacagTTTGAAGACTTCCAAATGAAATGGGCCTTTGAAACTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30087213|gb|CB885421.1|CB885421
EST:     ATGAATTCATGGAGGCTGTCCATGCACGTTGGCCTAAAGCAGTTGTGCAG                         TTTGAAGACTTCCAAATGAAATGGGCCTTTGAGACTCTTCAGAGGTATCGG
genomic: ATGAATTCATGGAGGCTGTCCATGCACGTTGGCCTAAAGCAGTTGTGCAGgtattgtgct ... aaaatcacagTTTGAAGACTTCCAAATGAAATGGGCCTTTGAGACTCTTCAGAGGTATCGG
EST: gi|74238358|gb|DT646272.1|DT646272
EST:     ATGAAATCATGGAGGCTGTCCATGCACGTTGGCCTAAAGCAGTTGTGCAG                         TTTGAAGACTTCC
genomic: ATGAATTCATGGAGGCTGTCCATGCACGTTGGCCTAAAGCAGTTGTGCAGgtattgtgct ... aaaatcacagTTTGAAGACTTCC
EST: gi|33094812|gb|CF054806.1|CF054806
EST:     ATGAATTCATGGAGGCTGTCCATGCACGTTGGCCTAAAGCAGTTGTGCAG                         TTTGAAGACTTCCAAATGAAATGGGCCTTTGAGACTCTTCAGAGGTATCGG
genomic: ATGAATTCATGGAGGCTGTCCATGCACGTTGGCCTAAAGCAGTTGTGCAGgtattgtgct ... aaaatcacagTTTGAAGACTTCCAAATGAAATGGGCCTTTGAGACTCTTCAGAGGTATCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccctactattttcgctcaaaatactgctccctttctgaagtgataaaatcacagTTTGAAGACTTCCAAATGAAATGGGCCTTTGAGACTCTTCAGAGGTATCGGAACCGATTTTGCATGTTCAATGATGACGTACAG
                                         tgataaaat  TA-rich tract