1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tataattattttttgagtgttcatataatggcaactactgtattaaatagtgttgccgaaccatgtttcttacttgatggcagaagttgaacaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG
species | Zea mays |
transcript | GRMZM2G085670_T04 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTA-G --GGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAEST: gi|93013201|gb|EB638721.1|EB638721
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... acaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG --G-CAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAEST: gi|86473889|gb|DY240259.1|DY240259
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... acaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATT-A- -AGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAEST: gi|71330909|gb|DR802251.1|DR802251
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... acaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG --G-CAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAEST: gi|71306428|gb|DR789361.1|DR789361
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... acaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATT-A- -AGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAEST: gi|33092814|gb|CF052808.1|CF052808
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... acaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG CAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAEST: gi|211193128|gb|FL100640.1|FL100640
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... acaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG --G-CAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAEST: gi|74236689|gb|DT644603.1|DT644603
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... acaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTA
EST: ACCAGAGAGAATTTGAAGACAGAGTGGAAGAGGCCAAAGAATCGATTAAG --G-CAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAEST: gi|76936648|gb|DV174824.1|DV174824
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... acaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG CAGGCAGACATCGACATACGAGGGCATGACGACTAEST: gi|71423346|gb|DR806010.1|DR806010
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... acaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG --G-CAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAEST: gi|211111836|gb|FL481581.1|FL481581
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... acaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG CAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAEST: gi|60359667|gb|DN226640.1|DN226640
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... acaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG CAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAEST: gi|78024318|gb|DV492705.1|DV492705
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... acaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTA
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATT-A- -AGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTA
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... acaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTA
aatagtgttgccgaaccatgtttcttacttgatggcagaagttgaacaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG
aacaatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataattattttttgagtgttcatataatggcaactactgtattaaatagtgttgccgaaccatgtttcttacttgatggcagaagttgaacaatttaagCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCGACCAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - -ttcatat
- - - - - - - - - - - - - - - - -actactg
- - - - - - - - - - - - - - - - - - - - - - - - - tgttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagaag