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gtgagctagattaaactgaagcatttgttaggaataaatttgcatctgcttgtgatgagttatgctctgttttcttcattttcctacttctgccttactgcctcatgtttagatatataattattttttgagtgttcatataatggcaactactgtattaaatagtgttgccgaaccatgtttcttacttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCG
species | Zea mays |
transcript | GRMZM2G085670_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG AAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTEST: gi|32927397|gb|CF032209.1|CF032209
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAGGAGGCCAAAAAATCAATTAAG AAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTEST: gi|32934734|gb|CF039546.1|CF039546
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG AAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTEST: gi|71764777|gb|DR962714.1|DR962714
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG AAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTEST: gi|149000178|gb|EE037317.2|EE037317
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG AAGTTGAACAATTTAGGCAGGCAGACATCGACATACGAGGGCATGACGACTEST: gi|32927878|gb|CF032690.1|CF032690
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG AAGTTGACCAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTEST: gi|50325880|gb|CO521006.1|CO521006
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG AAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTEST: gi|211512612|gb|FL228205.1|FL228205
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAAGCCAAAAAATCAATTAGG AAGTTGAACAATTTTAGCAEST: gi|32933246|gb|CF038058.1|CF038058
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCA
EST: ACCGGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG AAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTEST: gi|32927819|gb|CF032631.1|CF032631
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG AAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTEST: gi|32927866|gb|CF032678.1|CF032678
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG AAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTEST: gi|31360706|gb|CD445063.1|CD445063
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG AAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTEST: gi|32927641|gb|CF032453.1|CF032453
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG AAGTTGAGCAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTEST: gi|32927565|gb|CF032377.1|CF032377
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG AAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTEST: gi|78090434|gb|DV518808.1|DV518808
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG AAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTEST: gi|211226565|gb|FL435978.1|FL435978
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG AAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTEST: gi|78090435|gb|DV518809.1|DV518809
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
EST: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAG AAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
genomic: ACCAGAAAGAATTTGAAGACAGAGTGGAAGAGGCCAAAAAATCAATTAAGgtgagctaga ... ttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACT
tggcaactactgtattaaatagtgttgccgaaccatgtttcttacttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCG
tttcttactt CT-rich tract
tactgtattaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctagattaaactgaagcatttgttaggaataaatttgcatctgcttgtgatgagttatgctctgttttcttcattttcctacttctgccttactgcctcatgtttagatatataattattttttgagtgttcatataatggcaactactgtattaaatagtgttgccgaaccatgtttcttacttgatggcagAAGTTGAACAATTTAAGCAGGCAGACATCGACATACGAGGGCATGACGACTACCTCTCTGAATCTGTAGGAATAATGGATTTTGAAGAGGACCGTGTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA