1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatccaaaatactttaaaaccacaagtcaacgaatggcattataacagcgtggaagctgttgctaaacatcaccttagtagaattacacattagtttggttattctggattgagatatgtgctcgacaagagtgttagtaactgaaaattattcctgcagCTGCGCACGTGGCAGCCTCAAACGACAAGAAGTTTTCAAGAAAAAGGGAGTTTTCCAG
species | Zea mays |
transcript | GRMZM2G085000_T04 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTAGTACGAGAGACGCTTGTTGAGTTGGAATTGCCACATTTGCTACACAG CTGCGCACGTGGCAGCCTCAAACGACAAGAAGTTTTCAAGAAAAAGGGAGTEST: gi|148937629|gb|EC881822.2|EC881822
genomic: TTAGTACGAGAGACGCTTGTTGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... attcctgcagCTGCGCACGTGGCAGCCTCAAACGACAAGAAGTTTTCAAGAAAAAGGGAGT
EST: TTAGTACGAGAGACGCTTGTTGAGTTGGAATTGCCACATCTGCTACACAG CTGCGCACGTGGCAGCCTCAAACGACAAGAAGTTTTCAAGAAAAAGGGAGTEST: gi|60352714|gb|DN219687.1|DN219687
genomic: TTAGTACGAGAGACGCTTGTTGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... attcctgcagCTGCGCACGTGGCAGCCTCAAACGACAAGAAGTTTTCAAGAAAAAGGGAGT
EST: TTAGTACGAGAGACGCTTGTTGAGTTGGAATTGCCACATCTGCTACACAG CTGCGCACGTGGCAGCCTCAAACGACAAGAAGTTTTCAAGAAAAAGGGAGT
genomic: TTAGTACGAGAGACGCTTGTTGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... attcctgcagCTGCGCACGTGGCAGCCTCAAACGACAAGAAGTTTTCAAGAAAAAGGGAGT
tggattgagatatgtgctcgacaagagtgttagtaactgaaaattattcctgcagCTGCGCACGTGGCAGCCTCAAACGACAAGAAGTTTTCAAGAAAAAGGGAGTTTTCCAG
tagtaac putative branch site (score: 1)
ttattcct putative PPT
taactgaaaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccaaaatactttaaaaccacaagtcaacgaatggcattataacagcgtggaagctgttgctaaacatcaccttagtagaattacacattagtttggttattctggattgagatatgtgctcgacaagagtgttagtaactgaaaattattcctgcagCTGCGCACGTGGCAGCCTCAAACGACAAGAAGTTTTCAAGAAAAAGGGAGTTTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA