Sequence
atgc intronic sequence ATGC exonic sequencegtaaggacatataagaatcaactaagaaaagacattaggtttggacgatcaaattctatgaacttatgaactttgttaccagGTCCATTGTACTGGCCAACATTTGTGGTGGCTGTAGCTGCTGCTATAATTGCAAGCCAAGCTATGATATCTGGTGCCTTTGCAATTATTGCTCAGTCCCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G084779_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g70490.1 (Oryza sativa), 3'ss of exon 7
gtaaggacat--ataagaatcaactaagaaaagacat------taggtttggacgatcaaatt---ctatgaacttatgaactttgttaccagGTCCATTGTACTGGCCAACATTTGTGGTGGCTGTAGCTGCTGCTATAATTGCAAGCCAAGCTATGATATCTGGTGCCTTTGCAATTATTGCTCAGTCCCA---------------------------------
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gtacaaacaataactaaagacagcaaacaaatgccatgatttgcacatttgaaatattagaactaacaaagaactcattggcattgttatcagacccattatattggccaacatttgtggtggcagTCGCAGCTGCCATAATTGCAAGCCAGGCTATGATATCTGGTGCATTCGCAATCATTGCTCAGTCCCAAATTCTAGGTTGTTTTCCACGAGTTCGTGTGAT
upper sequence: GRMZM2G084779_T02 (Zea mays), 3'ss of exon 7
lower sequence: Vv01s0011g03020.t01 (Vitis vinifera), 3'ss of exon 7
gtaagga-catataagaatcaactaagaaaagacattaggtttggacgatcaaattctatgaacttatgaactt---tgttaccagGTCCATTGTACTGGCCAACATTTGTGGTGGCTGTAGCTGCTGCTATAATTGCAAGCCAAGCTATGATATCTGGTGCCTTTGCAATTATTGCTCAGTCCCA
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gtaaaactcttagcaggctgcagaaggggatcaattgacgtctcaaagagttccttgttttgactaacacttctatatatgggcagATCCTTTGTATTGGCCAACGTTTGTCGTGGCCGTTGCTGCTGCCATTATTGCTAGCCAAGCTATGATATCAGGAGCATTTGCAATTATCTCGCAGTCCCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagacattaggtttggacgatcaaattctatgaacttatgaactttgttaccagGTCCATTGTACTGGCCAACATTTGTGGTGGCTGTAGCTGCTGCTATAATTGCAAGCCAAGCTATGATATCTGGTGCCTTTGCAATTATTGCTCAGTCCCA
ctttgtt CT-rich tract
aaattctat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaggacatataagaatcaactaagaaaagacattaggtttggacgatcaaattctatgaacttatgaactttgttaccagGTCCATTGTACTGGCCAACATTTGTGGTGGCTGTAGCTGCTGCTATAATTGCAAGCCAAGCTATGATATCTGGTGCCTTTGCAATTATTGCTCAGTCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT