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gtctgaccttttcctgttctatttgctcacttgactttactgctcaggtgaaagtctgaagctctgtttttatgaacctaatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGCTTGCTGGCGGTGTTGCTGTCATTCAG
species | Zea mays |
transcript | GRMZM2G083716_T04 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAG GCNGCAGAACAAGAATNCGAAAAGGAAAAGCTCAATGAGAGGATAGCGAANEST: gi|211390791|gb|FL311861.1|FL311861
genomic: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAG
EST: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAG GCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGEST: gi|211283747|gb|FL354677.1|FL354677
genomic: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAG
EST: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAG GCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGEST: gi|33094001|gb|CF053995.1|CF053995
genomic: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAG
EST: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTGATTGAG GCAGCAGAACAAGAATACGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGEST: gi|22545503|gb|BU097862.1|BU097862
genomic: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAG
EST: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAG GCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGEST: gi|87156784|gb|DY401573.1|DY401573
genomic: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAG
EST: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAG GCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGEST: gi|32935129|gb|CF039941.1|CF039941
genomic: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAG
EST: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTGATTGAG GCAGCAGAACAAGAATAEST: gi|24934364|gb|CA452582.1|CA452582
genomic: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATA
EST: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAG GCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGEST: gi|23357758|gb|BU645407.1|BU645407
genomic: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAG
EST: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAG GCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGEST: gi|32837828|gb|CD977506.1|CD977506
genomic: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAG
EST: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTGATTGAG GCAGCAGAACAAGAATACGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGEST: gi|211420404|gb|FL361813.1|FL361813
genomic: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAG
EST: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAG GCAGCAGAACAAGAATATGAAAAGGAAAAGCTCEST: gi|51592649|gb|CV071795.1|CV071795
genomic: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTC
EST: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAG GCAGCAGAGCAAGAATACGAAAAGGAAAAGCTCAATGAGAGGGATAGCGAAEST: gi|211414113|gb|FL317428.1|FL317428
genomic: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGG-ATAGCGAA
EST: CCCAGGAAGAAGTTACTAAGAGGGNTGCACAGATTAAAAATCTCATTGAG GCAGCAGAACAAGAATATGAAAAGGAAAAGCTCANTGAGAGGATAGCGAAGEST: gi|211268071|gb|FL357474.1|FL357474
genomic: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAG
EST: AAAAATCTCATTGAG GCAGCAGAACAAGAATACGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGEST: gi|26558604|gb|CA830839.1|CA830839
genomic: AAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAG
EST: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAG GCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGEST: gi|22545873|gb|BU098247.1|BU098247
genomic: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAG
EST: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAG GCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGEST: gi|120480889|gb|EH211078.1|EH211078
genomic: CCCAGGAAGAAGTTACTAAGAGGGTTGCACAGATTAAAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAG
EST: AAAATCTCATTGAG GCAGCAGAACCAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAG
genomic: AAAATCTCATTGAGgtctgacctt ... taatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAG
actttactgctcaggtgaaagtctgaagctctgtttttatgaacctaatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGCTTGCTGGCGGTGTTGCTGTCATTCAG
acctaat putative branch site (score: 1080)
tttttatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgaccttttcctgttctatttgctcacttgactttactgctcaggtgaaagtctgaagctctgtttttatgaacctaatttgcagGCAGCAGAACAAGAATATGAAAAGGAAAAGCTCAATGAGAGGATAGCGAAGCTTGCTGGCGGTGTTGCTGTCATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT