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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttatctctttggcctagcattttacatcaaattgctcctctacattcttagcagctcctatttgctgacttactttcttattgttttcctttgtcacagACTGACATGGATAGTACCAACTTGTATGCATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATT

Basic information

species Zea mays
transcript GRMZM2G083344_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083344_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os05g15160.1 (Oryza sativa), 3'ss of exon 7
gtttatctctttggcctagcattttacatcaaattgctcctctacattcttagcagctcctatttgctgacttactttcttattgttttcctttgtcacagACTGACATGGATAGTACCAACTTGTATGCATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATT
||||   | ||    |||    | | |||  |  | | |   | |  | ||   |   ||  ||   |   ||||||| ||  ||||   |||| |||||||||||||||||||| |||||| ||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||
gtttgcttgttacctctaatgatctgcatgcatattcactcttcc--ttttgatactcccgtttcatttttttactttgttgctgtt---ctttatcacagACTGACATGGATAGCACCAACCTGTATGCGTACATCTCAATAATTGCTCTCCTTGTCTGCATCCCTCCTGCAATTATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9028706|gb|BE238746.1|BE238746
EST:     TCTCAAATATTTCTTTCACCTACCGAAGCATCTATTCTAAGAAGGCTATG                         ACTGACATGGATAGTACCAACTTGTATGCATACATATCAATAATTGCTCTC
genomic: TCTCAAATATTTCTTTCACCTACCGAAGCATCTATTCTAAGAAGGCTATGgtttatctct ... tttgtcacagACTGACATGGATAGTACCAACTTGTATGCATACATATCAATAATTGCTCTC
EST: gi|71328475|gb|DR800887.1|DR800887
EST:     GCATCTATTCTAAGAAGGCTATG                         ACTGACATGGATAGTACCAACTTGTATGCATACATATCAATAATTGCTCTC
genomic: GCATCTATTCTAAGAAGGCTATGgtttatctct ... tttgtcacagACTGACATGGATAGTACCAACTTGTATGCATACATATCAATAATTGCTCTC
EST: gi|76930049|gb|DV172255.1|DV172255
EST:     TCTCAAATATTTCTTTCACCTACCGAAGCATCTATTCTAAGAAGGCTATG                         ACTGACATGGATAGTACCAACTTGTATGCATACATATCAATAATTGCTCTC
genomic: TCTCAAATATTTCTTTCACCTACCGAAGCATCTATTCTAAGAAGGCTATGgtttatctct ... tttgtcacagACTGACATGGATAGTACCAACTTGTATGCATACATATCAATAATTGCTCTC
EST: gi|71768355|gb|DR966292.1|DR966292
EST:     TCTCAAATATTTCTTTCACCTACCGAAGCATCTATTCTAAGAAGGCTATG                         ACTGACATGGATAGTACCAACTTGTATGCATACATATCAATAATTGCTCTC
genomic: TCTCAAATATTTCTTTCACCTACCGAAGCATCTATTCTAAGAAGGCTATGgtttatctct ... tttgtcacagACTGACATGGATAGTACCAACTTGTATGCATACATATCAATAATTGCTCTC
EST: gi|32862760|gb|CF002442.1|CF002442
EST:     TCTCAAATATTTCTTTCACCTACCGAAGCATCTATTCTAAGAAGGCTATG                         ACTGACATGGATAGTACCAACTTGTATGCATACATATCAATAATTGCTCTC
genomic: TCTCAAATATTTCTTTCACCTACCGAAGCATCTATTCTAAGAAGGCTATGgtttatctct ... tttgtcacagACTGACATGGATAGTACCAACTTGTATGCATACATATCAATAATTGCTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttagcagctcctatttgctgacttactttcttattgttttcctttgtcacagACTGACATGGATAGTACCAACTTGTATGCATACATATCAATAATTGCTCTCTTTGTCTGCATCCCCCCTGCAATTATT
                      gacttac  putative branch site (score: 2)
                        cttactttcttattgt  CT-rich tract
                             tttcttattgtttt  TA-rich tract