1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcagctttcatttggccagtgagcctgagatgctgctcgactcattgttttggaggcagcaaccatatctaacaccaagttttttatttcacaatttgtatgagcagATGAACTCTGTTGACGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTGGCAGGACGCATGGCCCTATGAAGAATCTGGGCTTTGCTCGGTAGATTAT
species | Zea mays |
transcript | GRMZM2G081812_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTATTGTAGCTTAAGTTTGGTCGAGAATGTGACAAGAGTCTTGCTCCAG ATGAACTCTGTTGACGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTGEST: gi|9742881|gb|BE519029.1|BE519029
genomic: TTTATTGTAGCTTAAGTTTGGTCGAGAATGTGACAAGAGTCTTGCTCCAGgtcagctttc ... gtatgagcagATGAACTCTGTTGACGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTG
EST: TTTATTGTAGCTTAAGTTTGGTCGAGAATGTGACAAGAGTCTTGCTCCAG ATGAACTCTGTTGACGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTGEST: gi|60394945|gb|DN227814.1|DN227814
genomic: TTTATTGTAGCTTAAGTTTGGTCGAGAATGTGACAAGAGTCTTGCTCCAGgtcagctttc ... gtatgagcagATGAACTCTGTTGACGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTG
EST: TTTATTGTAGCTTAAGTTTGGTCGAGAATGTGACAAGAGTCTTGCTCCAG ATGAACTCTGTTGACGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTG
genomic: TTTATTGTAGCTTAAGTTTGGTCGAGAATGTGACAAGAGTCTTGCTCCAGgtcagctttc ... gtatgagcagATGAACTCTGTTGACGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTG
gaggcagcaaccatatctaacaccaagttttttatttcacaatttgtatgagcagATGAACTCTGTTGACGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTGGCAGGACGCATGGCCCTATGAAGAATCTGGGCTTTGCTCGGTAGATTAT
atctaac putative branch site (score: 2)
ttttttatttcacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagctttcatttggccagtgagcctgagatgctgctcgactcattgttttggaggcagcaaccatatctaacaccaagttttttatttcacaatttgtatgagcagATGAACTCTGTTGACGCAGCAATTGATCGAAGAATATCAGAAAGTCGGCTGGCAGGACGCATGGCCCTATGAAGAATCTGGGCTTTGCTCGGTAGATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA