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gttagtttaacctttaaattgctggcacttagctttaccccaccattttgcattaccctgtttgctttttttaaattccatttagGGTGAGACCAATATAAAGCCATTGTGGGGTACCGCACAGCTCTTTATGCATCCACGTTACATGCATGGCGCTGCTACGAG
species | Zea mays |
transcript | GRMZM2G081682_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAACAAATTCTAACTTGGATGAGATAGTCCAGCTGGCAAAGCAGCTGCAG GGTGAGACCAATATAAAGCCATTGTGGGGTEST: gi|31349785|gb|CD434142.1|CD434142
genomic: AAACAAATTCTAACTTGGATGAGATAGTCCAGCTGGCAAAGCAGCTGCAGgttagtttaa ... ttccatttagGGTGAGACCAATATAAAGCCATTGTGGGGT
EST: AAACAAATTCTAACTTGGATGAGATAGTCCAGCTGGCAAAGCAGCTGCAG GGTGAGACCAATATAAAGCCATTGTGGGGTACCGCACAGCTCTTTATGCATEST: gi|71426924|gb|DR807974.1|DR807974
genomic: AAACAAATTCTAACTTGGATGAGATAGTCCAGCTGGCAAAGCAGCTGCAGgttagtttaa ... ttccatttagGGTGAGACCAATATAAAGCCATTGTGGGGTACCGCACAGCTCTTTATGCAT
EST: AAACAAATTCTAACTTGGATGAGATAGTCCAGCTGGCAAAGCAGCTGCAG GGTGAGACCAATATAAAGCCATTGTGGGGTACCGCACAGCTCTTTATGCATEST: gi|74245361|gb|DT653275.1|DT653275
genomic: AAACAAATTCTAACTTGGATGAGATAGTCCAGCTGGCAAAGCAGCTGCAGgttagtttaa ... ttccatttagGGTGAGACCAATATAAAGCCATTGTGGGGTACCGCACAGCTCTTTATGCAT
EST: AAACAAATTCTAACTTGGATGAGATAGTCCAGCTGGCAAAGCAGCTGCAG GGTGAGACCAATATAAAGCCATTGTGGGGTACCGCACAGCTCTTTATGCATEST: gi|74232804|gb|DT640718.1|DT640718
genomic: AAACAAATTCTAACTTGGATGAGATAGTCCAGCTGGCAAAGCAGCTGCAGgttagtttaa ... ttccatttagGGTGAGACCAATATAAAGCCATTGTGGGGTACCGCACAGCTCTTTATGCAT
EST: AAACAAATTCTAACTTGGATGAGATAGTCCAGCTGGCAAAGCAGCTGCAG GGTGAGACCAATATAAAGCCATTGTGGGGTACCGCACAGCTCTTTATGCATEST: gi|211310239|gb|FL338849.1|FL338849
genomic: AAACAAATTCTAACTTGGATGAGATAGTCCAGCTGGCAAAGCAGCTGCAGgttagtttaa ... ttccatttagGGTGAGACCAATATAAAGCCATTGTGGGGTACCGCACAGCTCTTTATGCAT
EST: AAACAAATTCTAACTTGGATGAGATAGTCCAGCTGGCAAAGCAGCTGCAG GGTGAGACCAATATAAAGCCAATGTGGGGTACCGCACAGCTCTTTATGGCAEST: gi|32844196|gb|CD983877.1|CD983877
genomic: AAACAAATTCTAACTTGGATGAGATAGTCCAGCTGGCAAAGCAGCTGCAGgttagtttaa ... ttccatttagGGTGAGACCAATATAAAGCCATTGTGGGGTACCGCACAGCTCTTTATG-CA
EST: AAACAAATTCTAACTTGGATGAGATAGTCCAGCTGGCAAAGCAGCTGCAG GGTGAGACCAATATAAAGCCATTGTGGGGT
genomic: AAACAAATTCTAACTTGGATGAGATAGTCCAGCTGGCAAAGCAGCTGCAGgttagtttaa ... ttccatttagGGTGAGACCAATATAAAGCCATTGTGGGGT
agctttaccccaccattttgcattaccctgtttgctttttttaaattccatttagGGTGAGACCAATATAAAGCCATTGTGGGGTACCGCACAGCTCTTTATGCATCCACGTTACATGCATGGCGCTGCTACGAG
ttccattt CT-rich tract
tttttttaaattccat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttaacctttaaattgctggcacttagctttaccccaccattttgcattaccctgtttgctttttttaaattccatttagGGTGAGACCAATATAAAGCCATTGTGGGGTACCGCACAGCTCTTTATGCATCCACGTTACATGCATGGCGCTGCTACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT