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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcattcattgtgagatctctgtatgttgtaactactgtaactttgaaagaacttgcttatacttcaagtcaacctaactgttctcttgttcataagcagTTGGCTCCCAAGATGTTTATCCCTGTACTATTTGGACATGGTCTGAATGATATGTTTATTCAGCCTCACCATTGTGATCGTATTCACCAGGCATATGGG

Basic information

species Zea mays
transcript GRMZM2G081642_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081642_T04 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g10440.1 (Oryza sativa), 3'ss of exon 7
gtcattcattgtgagatctctgtatgttgtaactactgtaactttgaaag--aacttgct--tatacttcaagtcaacctaactgttctcttgttcataagcagTTGGCTCCCAAGATGTTTATCCCTGTACTATTTGGACATGGTCTGAATGATATGTTTATTCAGCCTCACCATTGTGATCGTATTCACCAGGCATATGGG
    |  | | || |||||       |  ||  | | |||| ||| || |    || |||  || | ||   |   || |   ||||||||||||| ||| ||||| |||||||||| |||||| |||| | | ||||| |||| |   ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||
---ttgaactttgcgatctgaagtgctcttagttgcagtaattttaaatgcttgctcgctcctacaattgtggctgactttg-tgttctcttgttcttaaacagTTCGCTCCCAAGACGTTTATTCCTGCATTGTTTGGTCATGCTTCAAATGACATGTTCATTCAGCCTCACCACTGTGATCGTATTCACCAGGCGTATGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaagaacttgcttatacttcaagtcaacctaactgttctcttgttcataagcagTTGGCTCCCAAGATGTTTATCCCTGTACTATTTGGACATGGTCTGAATGATATGTTTATTCAGCCTCACCATTGTGATCGTATTCACCAGGCATATGGG
                           acctaac  putative branch site (score: 2)
                                 ctgttctcttgttc  CT-rich tract
            ttatactt  TA-rich tract