1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacgctcttaacactctgctaattcattttatgttcaacatgaggaaagaaaaaatatatatagcgagccaagtgtctgaccactccattctacctgctacctcagGACTGTTGTTTAATCCCGGAGTCACCCTTCTACCTCGAAGGGAAGGGAGGACTCCTCGAGTTCGTCGAGAGGCGGCTCAAGGACAACGGCCACATGGTCA
species | Zea mays |
transcript | GRMZM2G080375_T06 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTACGCGACTCTAGCTAGCCGTGATTG-G GACTGTTGTTTAATCCCGGAGTCACCCTTCTACCTCGAAGGGAAGGGAGGEST: gi|116813643|gb|EC856113.1|EC856113
genomic: GTACGCGACTCTAGCTAGCCGTGA-TGTGgtacgctctt ... gctacctcagGACTGTTGTTTAATCCCGGAGTCACCCTTCTACCTCGAAGGGAAGGGAGG
EST: GTTTTATCGCGATGTACGCAACTCTAGCTAGCCGTGATGTG GACTGTTGTTTAATCCCGGAGTCACCCTTCTACCTCGAAGGGAAGGEST: gi|211450005|gb|FL281917.1|FL281917
genomic: GTTTTATCGCGATGTACGCGACTCTAGCTAGCCGTGATGTGgtacgctctt ... gctacctcagGACTGTTGTTTAATCCCGGAGTCACCCTTCTACCTCGAAGGGAAGG
EST: GTTTTATCGCGATGTACGCGACTCTAGCTAGCCGTGATGTG GACTGTTGTTTAATCCCGGAGTCACCEST: gi|211450006|gb|FL281918.1|FL281918
genomic: GTTTTATCGCGATGTACGCGACTCTAGCTAGCCGTGATGTGgtacgctctt ... gctacctcagGACTGTTGTTTAATCCCGGAGTCACC
EST: GTTTTATCGCGATGTACGCGACTCTAGCTAGCCGTGATGTG GACTGTTGTTTAATCCCGGAGTCACCCTTCTACCTCGAAGGGAAGGGAGGA
genomic: GTTTTATCGCGATGTACGCGACTCTAGCTAGCCGTGATGTGgtacgctctt ... gctacctcagGACTGTTGTTTAATCCCGGAGTCACCCTTCTACCTCGAAGGGAAGGGAGGA
aaaatatatatagcgagccaagtgtctgaccactccattctacctgctacctcagGACTGTTGTTTAATCCCGGAGTCACCCTTCTACCTCGAAGGGAAGGGAGGACTCCTCGAGTTCGTCGAGAGGCGGCTCAAGGACAACGGCCACATGGTCA
gtctgac putative branch site (score: 3)
ctacctc putative PPT
atatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgctcttaacactctgctaattcattttatgttcaacatgaggaaagaaaaaatatatatagcgagccaagtgtctgaccactccattctacctgctacctcagGACTGTTGTTTAATCCCGGAGTCACCCTTCTACCTCGAAGGGAAGGGAGGACTCCTCGAGTTCGTCGAGAGGCGGCTCAAGGACAACGGCCACATGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG