Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagagtgatagcatctgcaaagttctgaggctattcttttaaatcatactggaagactcatatttggttccaactataatgtgccatttcttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAAGTCGGTCGTCGGAAGGCATGAGCATCTATATGTGGATGGTGTTGGGGTC

Basic information

species Zea mays
transcript GRMZM2G080048_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G080048_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os07g48300.1 (Oryza sativa), 3'ss of exon 9
aagagtgatagcatctgcaaagttctgaggctattcttttaaatcatactgga-agactcatatt----tggttccaact--ataatgtgccatttcttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAAGTCGGTCGTCGGAAGGCATGAGCATCTATATGTGGATGGTGTTGGGGTC
        | ||  ||| ||  || | |  | |||  ||  |   | || | | |  |||   ||    || || | |||  || |         | || | | ||||||||||| || ||||| |||||||||||||| |||||||| || || ||||| ||||| |||||||| ||| |||   |    |  | |  || |  | 
------ctttgccactgaaacattttaaaac-atttgttggatgaaaaccgaatattctctcgttattttgcttgccactgaatcaacatttgcctattctgtctagTGTGGATCGTCGAGGTCTGTTGCTCCAATCAAGGCTGGATTTGTCGCACAAGTTGGTCGGCGGAAGGCCTGAACATAAGTCGAAGCTTTGGATTTGTCTA

upper sequence: GRMZM2G080048_T01 (Zea mays), 3'ss of exon 8
lower sequence: EFJ17507 (Selaginella moellendorffii), 3'ss of exon 4
aagagtgatagcatctgcaaagttctgaggctattcttttaaatcatactggaagactcatatt-tggttccaactataatgtgccatttcttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAAGTCGGTCGTCGGAAGGCATGAGCATCTATATGTGGATGGTGTTGGGGTC
                                              ||      ||   |  |  || ||| || | |  | ||   |||  ||  ||||||||||    ||  | || |||||||| |||||||||||||||||||||  ||| ||  |  | ||||      |  ||  |                   
---------------------------------------------gtaagcatcgatcaaagtcgtgattctaattctc-tttgttcttttgttgttttagTGTGGGAGCTCTCGCTCGGTTGCTCCTATCAAAGCTGGATTCGTTGCTAGAGTGGGGAGGAGAAAGGTCACCACGGCTTAA-------------------

upper sequence: GRMZM2G080048_T01 (Zea mays), 3'ss of exon 8
lower sequence: EFJ28838 (Selaginella moellendorffii), 3'ss of exon 8
aagagtgatagcatctgcaaagttctgaggctattcttttaaatcatactggaagactcatatt-tggttccaactataatgtgccatttcttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAAGTCGGTCGTCGGAAGG-CATGAGCATCTATATGTGGATGGTGTTGGGGTC
                                              ||      ||   |  |  || ||| || | |  | ||   |||  ||  ||||||| ||    ||  | || |||||||| |||||||||||||||||||||  ||| ||  |  | |||| ||  |     || |  | ||  |     | || 
---------------------------------------------gtaagcatcgatcaaagtcgtgattctaattctc-tttgttcttttgttgttttagTGCGGGAGCTCTCGCTCGGTTGCTCCTATCAAAGCTGGATTCGTTGCTAGAGTGGGGAGGAGAAAGGTCACCACGGCTTAAACTTAGAATGAAAGAGTGT-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71300898|gb|DR786478.1|DR786478
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|37374973|gb|CF623896.1|CF623896
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|60399446|gb|DN232258.1|DN232258
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|110538607|gb|EE042572.1|EE042572
EST:     AAATCGTCTTTTCTTCTTTCGCTGGGAACAG                         TGGGGATCTTCAAGGTCCGGTTGCTCCAATCAAAGCTGGGATTCGTTGCTC
genomic: AAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCC-GTTGCTCCAATCAAAGCT-GGATTCGTTGCTC
EST: gi|37383473|gb|CF628753.1|CF628753
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|211375010|gb|FL430791.1|FL430791
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|32841702|gb|CD981383.1|CD981383
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|32837616|gb|CD977294.1|CD977294
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGAT-TTTTTGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|60354326|gb|DN221299.1|DN221299
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|6527068|gb|AW216283.1|AW216283
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|94473773|gb|EB702731.1|EB702731
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCTTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|32931720|gb|CF036532.1|CF036532
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGCGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|26455990|gb|CA827573.1|CA827573
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|211252876|gb|FL444298.1|FL444298
EST:     ATTCCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|6031557|gb|AW076459.1|AW076459
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|91875908|gb|EB405865.1|EB405865
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCTTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|60357822|gb|DN224795.1|DN224795
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|19822348|gb|BQ048372.1|BQ048372
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|32863956|gb|CF003638.1|CF003638
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|32838696|gb|CD978377.1|CD978377
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|211028365|gb|FL441143.1|FL441143
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|60395435|gb|DN228305.1|DN228305
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|211091005|gb|FL434673.1|FL434673
EST:     TTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: TTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|14191391|gb|BG833621.1|BG833621
EST:     TGACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: T-ACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|32863955|gb|CF003637.1|CF003637
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|211047495|gb|FL474402.1|FL474402
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|60396947|gb|DN229766.1|DN229766
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|44901480|gb|CK828025.1|CK828025
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|60347700|gb|DN214673.1|DN214673
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|27521993|gb|CA989099.1|CA989099
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTTTTCCTTCGCTGCGAACAG                         TGTGGATTTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|113684258|gb|DW836400.1|DW836400
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCG
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCG
EST: gi|60398984|gb|DN231800.1|DN231800
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
EST: gi|60349100|gb|DN216073.1|DN216073
EST:     ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAG                         TGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA
genomic: ATACCATTCTGTCCAAGGAAAATCGTCTGTTCTTCCTTCGCTGCGAACAGgtaaatgtct ... ttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactggaagactcatatttggttccaactataatgtgccatttcttttatttagTGTGGATCTTCAAGGTCCGTTGCTCCAATCAAAGCTGGATTCGTTGCTCAAGTCGGTCGTCGGAAGGCATGAGCATCTATATGTGGATGGTGTTGGGGTC
                                      ccatttcttttattt  CT-rich tract
                                        atttcttttattta  TA-rich tract