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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattgttctgctctttctaccatccagtctgctttcatggctatactttacttttactgtgcagatgtcaagaatacacacttgataccatgcttacctgttcataacaagatcagcagctgttcacatactgagtgtcgctatttctgactgttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATCATATCCAAGTCTGCTCAACCTGCTGAAACACATGTTGCTCCATCAGAGG

Basic information

species Zea mays
transcript GRMZM2G079538_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079538_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os04g32330.1 (Oryza sativa), 3'ss of exon 7
gtaaattgttctgctctttctaccatccagtctgctttcatggctatactttacttttactgtgcagatgtcaagaatacacacttgataccatgcttacctgttcataacaagatcagcagctgttcacatactgagtgtcgctatttctgactgttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATCATATCCAAGTCTGCTCAACCTGCTGAAACACATGTTGCTCCATCAGAGG
                                                                     || || || |   || |  |  ||  |||  ||| |     ||   |||        ||  |  ||   | |   |  |  || || | |||| ||| |||||||||| ||||| || || |||||||||||||| |||||||| |||||||| ||||||||   ||| |||||||||||||||||||| || ||||
---------------------------------------------------------------------gtgaaaaacattgacct--tctca-acttggctgctttcgcca---tcatatttcactccgaagcta--tttttttgatcgtgcct-tggtttccagTTCATTGCTAGCGAAGGTGATACTGTTACTCCAGGCACCAAAGTTGCTATCATATCAAAGTCTGCGGCACCAGCTGAAACACATGTTGCTCCGTCTGAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148950981|gb|EC896624.2|EC896624
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|211325989|gb|FL407943.1|FL407943
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACT
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACT
EST: gi|148943959|gb|EC889039.2|EC889039
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|31355469|gb|CD439826.1|CD439826
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|31355590|gb|CD439947.1|CD439947
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|149015063|gb|EE044815.2|EE044815
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|5343075|gb|AI795485.1|AI795485
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|78103875|gb|DV522298.1|DV522298
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|148958216|gb|EC904424.2|EC904424
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|148991485|gb|EE033000.2|EE033000
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|149081048|gb|EE170148.2|EE170148
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|148931436|gb|EC874404.2|EC874404
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|31358640|gb|CD442997.1|CD442997
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|148978727|gb|EE026283.2|EE026283
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|149014456|gb|EE044070.2|EE044070
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|32808216|gb|CD960450.1|CD960450
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|149003557|gb|EE038930.2|EE038930
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|7145229|gb|AW506710.1|AW506710
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|31353408|gb|CD437765.1|CD437765
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|211169881|gb|FL077610.1|FL077610
EST:     GTCACTATAGATGTCGCAAGTCCTGGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTG-AGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|67033243|gb|CO461992.1|CO461992
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
EST: gi|29576970|gb|CB617082.1|CB617082
EST:     GTCACTATAGATGTCGCAAGTCCTGAGGCTGGAGTTATTGAAAAG                         CTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC
genomic: GTCACTATAGATGTCGCAAGTCCTGAGGCTGGTGTTATTGAAAAGgtaaattgtt ... ttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagatcagcagctgttcacatactgagtgtcgctatttctgactgttgtttacagCTCATTGCTAGTGAAGGCGACACAGTTACTCCAGGCACTAAAGTTGCAATCATATCCAAGTCTGCTCAACCTGCTGAAACACATGTTGCTCCATCAGAGG
                                    ttctgac  putative branch site (score: 2)
                                 tatttct  TA-rich tract