1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtgcctgattctttaaccttgtgaagcttctttgtgccattttttagtcatatttgatcccacattgttgataatttcagtttttctttgcattggttagCATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAA
species | Zea mays |
transcript | GRMZM2G079031_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGAGAGCTGCTGGTGCATTGTGGGGATTATCTGTTTCAGAAGCTAATAG CATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGEST: gi|31356620|gb|CD440977.1|CD440977
genomic: GAGAGAGCTGCTGGTGCATTGTGGGGATTATCTGTTTCAGAAGCTAATAGgtaactttaa ... cattggttagCATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACG
EST: GAGCGTGCTGCTGGTGCATTGTGGGGATTATCTGTTTCAGAAGCTAATAG CATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGEST: gi|87156811|gb|DY401600.1|DY401600
genomic: GAGAGAGCTGCTGGTGCATTGTGGGGATTATCTGTTTCAGAAGCTAATAGgtaactttaa ... cattggttagCATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACG
EST: GAGAGAGCTGCTGGTGCATTGTGGGGATTATCTGTTTCAGAAGCTAATAG CATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGEST: gi|31354799|gb|CD439156.1|CD439156
genomic: GAGAGAGCTGCTGGTGCATTGTGGGGATTATCTGTTTCAGAAGCTAATAGgtaactttaa ... cattggttagCATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACG
EST: GAGAGAGCTGCTGGTGCATTGTGGGGATTATCTGTTTCAGAAGCTAATAG CATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGEST: gi|23357711|gb|BU645360.1|BU645360
genomic: GAGAGAGCTGCTGGTGCATTGTGGGGATTATCTGTTTCAGAAGCTAATAGgtaactttaa ... cattggttagCATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACG
EST: GAGAGAGCTGCTGGTGCATTGTGGGGATTATCTGTTTCAGAAGCTAATAG CATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGEST: gi|74235479|gb|DT643393.1|DT643393
genomic: GAGAGAGCTGCTGGTGCATTGTGGGGATTATCTGTTTCAGAAGCTAATAGgtaactttaa ... cattggttagCATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACG
EST: GAGAGAGCTGCTGGTGCATTGTGGGGATTATCTGTTTCAGAAGCTAATAG CATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGEST: gi|50329592|gb|CO524718.1|CO524718
genomic: GAGAGAGCTGCTGGTGCATTGTGGGGATTATCTGTTTCAGAAGCTAATAGgtaactttaa ... cattggttagCATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACG
EST: GAGAGAGCTGCTGGTGCATTGTGGGGATTATCTGTTTCAGAAGCTAATAG CATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACG
genomic: GAGAGAGCTGCTGGTGCATTGTGGGGATTATCTGTTTCAGAAGCTAATAGgtaactttaa ... cattggttagCATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACG
agtcatatttgatcccacattgttgataatttcagtttttctttgcattggttagCATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAA
tgttgat putative branch site (score: 4)
tttttctttgcatt putative PPT
ataatttcagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcctgattctttaaccttgtgaagcttctttgtgccattttttagtcatatttgatcccacattgttgataatttcagtttttctttgcattggttagCATTGCAATTGGGCAGGGTGGTGGGGTTGCACCATTGCTCACATTGGCACGCTCAGAGGTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
-tgcctga
- - - - - - - - - - -tgaagct
- - - - - - - - - - - - - - - - - tgccatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgat