Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttttttttatcatattccatgatactcaatctatcttctacaagaaaaatattcttacagtattcttcattagtttatattatctttgttccttacagATTCTTAAATGATGAGATCCCAGTTCTGTTGCTCTATTCTTTGGTCCATGGGAACTGTGACTTTCAGGAATACGTCTTGGTTCGAACAGACTTGGATACT

Basic information

species Zea mays
transcript GRMZM2G078576_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078576_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g56630.2 (Oryza sativa), 3'ss of exon 7
tgttttttttatcatattccatgatactcaatctatcttctacaagaaaaat-attctta--cagtattcttcattagtttatattatctttgttccttacagATTCTTAAATGATGAGATCCCAGTTCTGTTGCTCTATTCTTTGGTCCATGGGAACTGTGACTTTCAGGAATACGTCTTGGTTCGAACAGACTTGGATACT
  |   ||||  ||||||    |    |||   ||| |   | | || |  | ||| |||   |  ||   |||| |  |     |||      ||| | ||||| |||||| ||||||| | | |||||  ||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||| ||||||||
-ttaacttttcacatatttgtggggggtca--ttatttagaataggatatttcattattaacgaagatcaatcataatgtccatctattcgctatccatgcagATGCTTAAAAGATGAGAGCTCGGTTCTACTGCTCTATTCTTTGGTCCATGGGAACTGTGACTTTCAGGAATATGTTCTGGTTCGAACAGACCTGGATACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211241026|gb|FL065527.1|FL065527
EST:     TTGATGCTCTTGGAAG                         ATTCTTAAATGATGAGATCCCAGTTCTGTTGCTCTATTCTTTGGTCCATGG
genomic: TTGATGCTCTTGGAAGgtgagaaatg ... ttccttacagATTCTTAAATGATGAGATCCCAGTTCTGTTGCTCTATTCTTTGGTCCATGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaaatattcttacagtattcttcattagtttatattatctttgttccttacagATTCTTAAATGATGAGATCCCAGTTCTGTTGCTCTATTCTTTGGTCCATGGGAACTGTGACTTTCAGGAATACGTCTTGGTTCGAACAGACTTGGATACT
        ttcttac  putative branch site (score: 2)
                                    ttatctttgttcctt  putative PPT
                 tattcttcattagttt  TA-rich tract