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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catatgtttttactcgtgcttcctggcatcactattggtctaaatggttttcttcatccatatgttattatgccaaaatacttgctctcctttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCAAGTAACACAGAGTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATT

Basic information

species Zea mays
transcript GRMZM2G078458_T04
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078458_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g03676.1 (Oryza sativa), 3'ss of exon 7
catatgtttttactcgtgcttcctggcatcactattggtctaaatggttttcttcatccatatgttattatgccaaaat---acttgct--ctcctttttggcagGAAATTGA------TATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCAAGTAACACAGAGTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATT
       || || | ||   |  |  |||| | ||     | |||   ||| |||| |||||| || || | ||||| |   || ||||  ||  || ||  |||| || ||        |||||||||||| ||   ||||   |||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||| ||||      
tgccaaattgtatttgt---ttttaacatctcaat--acttcaattaatttgttcacccatatcttcttgttccaaattttaacatgctaactgtttgtttccagGGAACTGGGACTGCCATTACAGCTAAGAATATCAGTGGCAATGATAATCCTAAATCAAGTAATACAGAGTCAATTTGGGTTGAGGGCCTTGTCCCTGGAA------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71298470|gb|DR785213.1|DR785213
EST:     TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAG                         GAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA
genomic: TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAGgtcaatttca ... tttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA
EST: gi|71766035|gb|DR963972.1|DR963972
EST:     TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAG                         GAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA
genomic: TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAGgtcaatttca ... tttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA
EST: gi|78108131|gb|DV526549.1|DV526549
EST:     TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAG                         GAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA
genomic: TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAGgtcaatttca ... tttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA
EST: gi|71319933|gb|DR796728.1|DR796728
EST:     TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAG                         GAAATTGATATTACAGCTAAGGATTGTAGTGCTGA
genomic: TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAGgtcaatttca ... tttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGA
EST: gi|148973503|gb|EE024603.2|EE024603
EST:     TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAG                         GAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCNTAA-CC
genomic: TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAGgtcaatttca ... tttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTC-TAAACC
EST: gi|71330009|gb|DR801742.1|DR801742
EST:     TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAG                         GAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA
genomic: TGGGCTCATGTGGCGATCAACAGGCCAGGGCTGACAATGATGCCCACCAGgtcaatttca ... tttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttttcttcatccatatgttattatgccaaaatacttgctctcctttttggcagGAAATTGATATTACAGCTAAGGATTGTAGTGCTGATGAGAATTCTAAACCAAGTAACACAGAGTCAATTTGGGTTGAGGGCCTTGTCCCAGGAATTGATT
                                 tacttgctctcctttt  CT-rich tract
              atatgttattat  TA-rich tract