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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaatagaattttttttttcatctaaaattttatgatttctatcttgacatcagctgtctatgcttacattaatgtgctctctctctctctctctctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTGCCTGGCCAGCTTTGGCTGCAGACTTGGATGCTGGAGACCAGAGCATTA

Basic information

species Zea mays
transcript GRMZM2G077222_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G077222_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g64400.3 (Oryza sativa), 3'ss of exon 8
gtaagaaat-agaattttttttttcatctaaaattttatgatttctatcttgacatcagctgtctatgcttacattaatgtgctctctctctctctctctctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTGCCTGGCCAGCTTTGGCTGCAGACTTGGATGCTGGAGACCAGAGCATTA
|| |||||| | ||  || || | | |||||  |  ||| |           | | ||||||  | | || |  ||||                  || ||| |||||||| | ||| ||||   ||||| || || ||| | ||||| |||||  ||||||| ||||| |||||||  || ||||||||||||||||||||||||||||
gtgagaaatgaaaagattcttatccttctaagttggtataa----------aagaccagctggttgttctgatgttaaaa----------------ctttctgtgggcagTCTATGTACAAAGCTTCTGGATATATGGACGTTGATAAAATAAATGCAGCTGCTTGGCCCGCTTTGGTGGCTGACTTGGATGCTGGAGACCAGAGCATTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211155347|gb|FL193257.1|FL193257
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGNTTGTTCNAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211505017|gb|FL316062.1|FL316062
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211265615|gb|FL356056.1|FL356056
EST:     GTTGNAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATNAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211001384|gb|FL323102.1|FL323102
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211308384|gb|FL348182.1|FL348182
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211155354|gb|FL193264.1|FL193264
EST:     TTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGC
genomic: TTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAA-Tgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGC
EST: gi|211464944|gb|FL327919.1|FL327919
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211143697|gb|FL324988.1|FL324988
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211287060|gb|FL337502.1|FL337502
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211155352|gb|FL193262.1|FL193262
EST:     TGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGGAAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGC
genomic: TGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAG-AAA-Tgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGC
EST: gi|24764139|gb|CA399306.1|CA399306
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211388119|gb|FL310430.1|FL310430
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211541249|gb|FL353983.1|FL353983
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|31357653|gb|CD442010.1|CD442010
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211012723|gb|FL335935.1|FL335935
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211183895|gb|FL345854.1|FL345854
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211163533|gb|FL327752.1|FL327752
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTT-GTTCAAACTATCTGGCTACATAGACATCGNTAAGATNAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211465954|gb|FL364649.1|FL364649
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACAC
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACAC
EST: gi|211239604|gb|FL338007.1|FL338007
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211153739|gb|FL193240.1|FL193240
EST:     TTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGC
genomic: TTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAA-Tgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGC
EST: gi|211478133|gb|FL352004.1|FL352004
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211130568|gb|FL330782.1|FL330782
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211320240|gb|FL338455.1|FL338455
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211093607|gb|FL328988.1|FL328988
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211155342|gb|FL193252.1|FL193252
EST:     GTTGGAAAATGNCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAA
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAA
EST: gi|211356808|gb|FL332694.1|FL332694
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211158735|gb|FL327705.1|FL327705
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGAC
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGAC
EST: gi|211356810|gb|FL332696.1|FL332696
EST:     GTTGGAAAATGNCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211133468|gb|FL349783.1|FL349783
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211480395|gb|FL326614.1|FL326614
EST:     GTTGGAAAATGGCCCTGGATAANANACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211432079|gb|FL309133.1|FL309133
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAAGACATCGATAAGATAAACACAGC
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATA-GACATCGATAAGATAAACACAGC
EST: gi|211509614|gb|FL308773.1|FL308773
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211534207|gb|FL317060.1|FL317060
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAAC
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAAC
EST: gi|211297774|gb|FL337584.1|FL337584
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211096961|gb|FL367333.1|FL367333
EST:     GTTGGAAAATGGCCCTGGATAANAGACAACTGCCTGAAGTTGACANAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAANATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211025945|gb|FL329790.1|FL329790
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211285077|gb|FL334450.1|FL334450
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGAT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGAT
EST: gi|211243597|gb|FL313136.1|FL313136
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211453287|gb|FL343581.1|FL343581
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
EST: gi|211455408|gb|FL343588.1|FL343588
EST:     GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAAT                         TGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT
genomic: GTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 46 (downstream exon)
Score: 324

TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTGCCTGGCCAGCTTTGGCTGCAGACTTGGATGCTGGAGACCAGAGCATTA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 629

TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTGCCTGGCCAGCTTTGGCTGCAGACTTGGATGCTGGAGACCAGAGCATTA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 266

TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTGCCTGGCCAGCTTTGGCTGCAGACTTGGATGCTGGAGACCAGAGCATTA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 454

TCCTTTGTCACGTCAAGACCTTGTGAGTTGGAAAATGGCCCTGGATAAGAGACAACTGCCTGAAGTTGACAGAAATgtaagaaata ... ctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTGCCTGGCCAGCTTTGGCTGCAGACTTGGATGCTGGAGACCAGAGCATTA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagctgtctatgcttacattaatgtgctctctctctctctctctctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTGCCTGGCCAGCTTTGGCTGCAGACTTGGATGCTGGAGACCAGAGCATTA
                   ttaatgtgctctctct  CT-rich tract
              ttacattaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagaaatagaattttttttttcatctaaaattttatgatttctatcttgacatcagctgtctatgcttacattaatgtgctctctctctctctctctctctgggcagTGTTTGTTCAAACTATCTGGCTACATAGACATCGATAAGATAAACACAGCTGCCTGGCCAGCTTTGGCTGCAGACTTGGATGCTGGAGACCAGAGCATTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA