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...tataaccaagttatggttcacaatgaagaatctaaaatacaattactgcaactaaatgcacctatttatgaactaaactagcaatttcttgttgcttcagCCAACAGGGTTTTGTTCACATACTCTATCAATTCTTGTGAATGATGTCCCTGGAGTTCTCAATCTTGTAACAGGTGTATTCTCCAGAAGGGGCTACAATA
species | Zea mays |
transcript | GRMZM2G077215_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAACAAGTCAAATTCTGGATGCTCATTGGGGTGTTATGACTGATGGCGAT CCAACAGGGTTTTGTTCACATACTCTATCAATTCTTGTGAATGATGTCCCTEST: gi|71435321|gb|DR816371.1|DR816371
genomic: CAACAAGTCAAATTCTGGATGCTCATTGGGGTGTTATGACTGATGGCGATgtacggtctt ... gttgcttcagCCAACAGGGTTTTGTTCACATACTCTATCAATTCTTGTGAATGATGTCCCT
EST: CAACAAGTCAAATTCTGGATGCTCATTGGGGTGTTATGACTGATGGCGAT CCAACAGGGTTTTGTTCACATACTCTATCAATTCTTGTGAATGATGTCCCT
genomic: CAACAAGTCAAATTCTGGATGCTCATTGGGGTGTTATGACTGATGGCGATgtacggtctt ... gttgcttcagCCAACAGGGTTTTGTTCACATACTCTATCAATTCTTGTGAATGATGTCCCT
ctgcaactaaatgcacctatttatgaactaaactagcaatttcttgttgcttcagCCAACAGGGTTTTGTTCACATACTCTATCAATTCTTGTGAATGATGTCCCTGGAGTTCTCAATCTTGTAACAGGTGTATTCTCCAGAAGGGGCTACAATA
aactaaa putative branch site (score: 82)
tttcttgttgcttc putative PPT
tatttatgaactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataaccaagttatggttcacaatgaagaatctaaaatacaattactgcaactaaatgcacctatttatgaactaaactagcaatttcttgttgcttcagCCAACAGGGTTTTGTTCACATACTCTATCAATTCTTGTGAATGATGTCCCTGGAGTTCTCAATCTTGTAACAGGTGTATTCTCCAGAAGGGGCTACAATA
- - - - - - - - - - - - - - - - - -aatacaa
- - - - - - - - - - - - - - - - - - - - - - -ctgcaac
- - - - - - - - - - - - - - - - - - - - - - - - -aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - aatgcac