1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caataacaattgagagcggagcagctccgtcccaccatgcttcagtaccaaacactatctaagtaaatcctgatgtaccacatcttcattgcttgaacagAGTTGAGAGGAGTACCAGAGGAGTTTGTTGTGCAATTGATCCCTCAGCATGCTAAGAAGCAATGTGCTTTCTTAGGAGTTTGAGAAAGCAGTTCAATTTT
species | Zea mays |
transcript | GRMZM2G075992_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCCCTTCCCCATCTCTTCAATTTTAAGCCTAATG AGTTGAGAGGAGTACCAGAGGAGTTTGTTGTGCAATTGATCCCTCAGCATGEST: gi|71327934|gb|DR800605.1|DR800605
genomic: TTCCCTTCCCCATCTCTTCAATTTTAAACCTAATGgtaagttcat ... gcttgaacagAGTTGAGAGGAGTACCAGAGGAGTTTGTTGTGCAATTGATCCCTCAGCATG
EST: TCCCAAATGGCCGTTCCCCTTCCCCATCTCTTCAATTTTTAAACCTAATG AGTTGAGAGGAGTACCAGAGGAGTTTGTTGTGCAATTGATCCCTCAGCATG
genomic: TACCAAATGGCCGTT-CCCTTCCCCATCTCTTCAA-TTTTAAACCTAATGgtaagttcat ... gcttgaacagAGTTGAGAGGAGTACCAGAGGAGTTTGTTGTGCAATTGATCCCTCAGCATG
taccaaacactatctaagtaaatcctgatgtaccacatcttcattgcttgaacagAGTTGAGAGGAGTACCAGAGGAGTTTGTTGTGCAATTGATCCCTCAGCATGCTAAGAAGCAATGTGCTTTCTTAGGAGTTTGAGAAAGCAGTTCAATTTT
tcctgat putative branch site (score: 30)
taagtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caataacaattgagagcggagcagctccgtcccaccatgcttcagtaccaaacactatctaagtaaatcctgatgtaccacatcttcattgcttgaacagAGTTGAGAGGAGTACCAGAGGAGTTTGTTGTGCAATTGATCCCTCAGCATGCTAAGAAGCAATGTGCTTTCTTAGGAGTTTGAGAAAGCAGTTCAATTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
-aataaca
- - - - - - - - - - gcagctc
- - - - - - - - - - - - - - - -ccaccat
- - - - - - - - - - - - - - - - - - - gcttcag
- - - - - - - - - - - - - - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgatg