ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtaagttttcatccccacagaacacttgaggcggctaaaaattcaataactccctcaattccctttcttccaagcaagcccttaggtgtcagtgttacattccgctaccatttgcttgtttccaactgatcgttgtttgaactccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCGCAGGGCTGAGCGGAAAAAACAGTTCAACTCCATCCTCTCGAACATCATG

Basic information

species	Zea mays
transcript	GRMZM2G075485_T01
intron #	7
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G075485_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 3'ss of exon 7

gtaagttttcatccccacagaacacttgaggcggctaaaaattcaataactccctcaattccctttcttccaagcaagcccttaggtgtcagtgttacattccgctaccatttgcttgtttccaactgatcgttgtttgaactccatggcagGAAG---AGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCGCAGGGCTGAGCGGAAAAAACAGTTCAACTCCATCCTCTCGAACATCATG
                                              |||  | |||| |  | | ||| ||||| || ||    |   || | | |    ||  | | || |||||   |    ||||    |   |  |||  | |  |||||||   | |||||| || |||||||| |||||||| || || |||||||||||||||||  |||||||  | | |||| ||||  | |||||   ||||   
---------------------------------------------gtaag-ctctcattctcttatctcccaagtaatcc----gccttccgagatgttgtctaccatcagttgctcact----actgcatttgcctcaaacctcgtcacagGAAGAACAAGAAGAAGAGCGAGGAGAACGATCTGATCCTCGCGATCTCACAGCGCAGGGCGCAGCGGAAGGACCGGTTCGACTCGGTGCTCTCATCCATC---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|71757753|gb|DR955690.1|DR955690

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|91870824|gb|EB401103.1|EB401103

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|32805977|gb|CD958211.1|CD958211

EST:     GATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: GATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|78074189|gb|DV502623.1|DV502623

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|32845400|gb|CD985081.1|CD985081

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|32850389|gb|CD990070.1|CD990070

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|211431464|gb|FL284143.1|FL284143

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATSSATCTGATACTGGCTATCTCACAGC
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATG-ATCTGATACTGGCTATCTCACAGC

EST: gi|32844155|gb|CD983836.1|CD983836

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|32845478|gb|CD985159.1|CD985159

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|60339110|gb|DN206083.1|DN206083

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|60341956|gb|DN208929.1|DN208929

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGC
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGC

EST: gi|78123755|gb|DV542139.1|DV542139

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATTTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|78116315|gb|DV534702.1|DV534702

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|78074190|gb|DV502624.1|DV502624

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|148958293|gb|EC904513.2|EC904513

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATTTGATTCTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|148958294|gb|EC904514.2|EC904514

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|78117499|gb|DV535886.1|DV535886

EST:     AAGATCTCAGGGATGGAGCCATCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|32945462|gb|CF050281.1|CF050281

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|32844895|gb|CD984576.1|CD984576

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|211348011|gb|FL479632.1|FL479632

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGWACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|60351082|gb|DN218055.1|DN218055

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|71772229|gb|DR970166.1|DR970166

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|71435377|gb|DR816427.1|DR816427

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

EST: gi|32833155|gb|CD972833.1|CD972833

EST:     AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAA                         GAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG
genomic: AAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 513

GTGAGCTGAAGTCAACTAAGGTGTATGAGAAATGGGCTAAAAAGATCTCAGGGATGGAGCCACCAACAAATCCGCTAGAGAGGAGAGTGAAgtaagttttc ... tccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCGCAGGGCTGAGCGGAAAAAACAGTTCAACTCCATCCTCTCGAACATCATG

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 157

Block sizes: 49 (upstream exon), 46 (downstream exon)
Score: 101

Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 150

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

cattccgctaccatttgcttgtttccaactgatcgttgtttgaactccatggcagGAAGAGGAAGAACAGTGAGGAGAATGATCTGATACTGGCTATCTCACAGCGCAGGGCTGAGCGGAAAAAACAGTTCAACTCCATCCTCTCGAACATCATG