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gtaaattcattcatttatgtctcggcttttggtgctatgacatctgatgagtggtatttgtcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGTCAATGCTTGTACTGAACAAGCATCGTGCTGGACTCAAG
species | Zea mays |
transcript | GRMZM2G074790_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGEST: gi|149014572|gb|EE044215.2|EE044215
genomic: AA-TCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
EST: AATCTCAAACATGGATTCTCTCCTTCCCAGCATAA-AAATT-CTATCAAG AATCGCCAGCCTCTTCTCATTGTTGCEST: gi|18649481|gb|BM498300.1|BM498300
genomic: AATCTCAAACATGGATTCTCTCCTTCC-AGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGC
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATEST: gi|87152753|gb|DY397542.1|DY397542
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCAT
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGEST: gi|19822484|gb|BQ048508.1|BQ048508
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCNAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGEST: gi|31351656|gb|CD436013.1|CD436013
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGEST: gi|31350305|gb|CD434662.1|CD434662
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGEST: gi|6021191|gb|AW066119.1|AW066119
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGEST: gi|18450399|gb|BM428677.1|BM428677
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGEST: gi|22489691|gb|BU049614.1|BU049614
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAG
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGEST: gi|87153562|gb|DY398351.1|DY398351
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGEST: gi|18648744|gb|BM497563.1|BM497563
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
EST: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAG AATCGGAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
genomic: AAATCTCAAACATGGATTCTCTCCTTCCAGCATTAGAAATTTCTATCAAGgtaaattcat ... tcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTG
tatgtctcggcttttggtgctatgacatctgatgagtggtatttgtcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGTCAATGCTTGTACTGAACAAGCATCGTGCTGGACTCAAG
atctgat putative branch site (score: 4)
tatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattcattcatttatgtctcggcttttggtgctatgacatctgatgagtggtatttgtcatatgtagAATCGCAAGCCTCTTCTCATTGTTGCTGAGGATGTTGAAGGAGATGCTCTGTCAATGCTTGTACTGAACAAGCATCGTGCTGGACTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA