1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactgtttgttgtattgtacaagttcatgatgcgctatgaccttcattgaggaacaacaaagatgtttctttgttgttcctctaagtgatactggtgaagcatccacttctctggtcgcgttatgatttcagcttgaattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGCATGGCAAGAGCTCGATAACCTTCTATGGGAATTCCTTCATTGCAG
species | Zea mays |
transcript | GRMZM2G073950_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|78077685|gb|DV506119.1|DV506119
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|211141683|gb|FL053511.1|FL053511
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|32790714|gb|CD942950.1|CD942950
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGGTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|113702021|gb|EE679525.1|EE679525
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|50324198|gb|CO519324.1|CO519324
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|29130437|gb|CB381141.1|CB381141
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|101394654|gb|EB819259.1|EB819259
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|91056600|gb|EB167018.1|EB167018
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCEST: gi|148953399|gb|EE152896.2|EE152896
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGC
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|78081735|gb|DV510147.1|DV510147
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|88758160|gb|DY542301.1|DY542301
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|32802461|gb|CD954697.1|CD954697
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CACGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|50324199|gb|CO519325.1|CO519325
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|84908437|gb|DW404315.1|DW404315
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|60346678|gb|DN213651.1|DN213651
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CACGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|148939361|gb|EC883888.2|EC883888
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAEST: gi|78078908|gb|DV507320.1|DV507320
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAA
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|32804827|gb|CD957063.1|CD957063
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CACGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|71417126|gb|DR803932.1|DR803932
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|71417127|gb|DR803933.1|DR803933
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCTAGGCCATGCTGGTGCCAACTTG GTCCCTCTTTGT-GCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAEST: gi|29544724|gb|CB605104.1|CB605104
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTT-GTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGA
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGEST: gi|78077686|gb|DV506120.1|DV506120
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
EST: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTG GTCCCTCTTGTTGCTTCCCACCGGATTGGCAGAGAAACTGTTGACACTGAG
genomic: CCCGTGAACATTGGAAGCGGGTTATGCAAGGCCATGCTGGTGCCAACTTGgtactgtttg ... aattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAG
ctggtgaagcatccacttctctggtcgcgttatgatttcagcttgaattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGCATGGCAAGAGCTCGATAACCTTCTATGGGAATTCCTTCATTGCAG
ttatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtttgttgtattgtacaagttcatgatgcgctatgaccttcattgaggaacaacaaagatgtttctttgttgttcctctaagtgatactggtgaagcatccacttctctggtcgcgttatgatttcagcttgaattatccagGTCCCTCTTGTTGCTTCCAACCGGATTGGCAGAGAAACTGTTGACACTGAGCATGGCAAGAGCTCGATAACCTTCTATGGGAATTCCTTCATTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT