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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtggattaccacagttaagtagtagtaagaaataggattcgtgggccatacatacaattttaatggtccatatatgattgtgcagTTTGAAGGGCCCCGGCTAATGCAGCATGGATTCAGTGATGCCATTGCAAAAGTAGGCTTGACAAAGTTTGTTAGTGACCTATTCTTGGTTGGACTGTTCT

Basic information

species Zea mays
transcript GRMZM2G070605_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070605_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g13770.2 (Oryza sativa), 3'ss of exon 8
gtaagtgtggattaccacagttaagtagtagtaagaaataggattcgtgggccatacatacaattt-taatggtccatatatgattg---tgcagTTTGAAGGGCCCCGGCTAATGCAGCATGGATTCAGTGATGCCATTGCAAAAGTAGGCTTGACAAAGTTTGTTAGTGACCTATTCTTGGTTGGACTGTTCT
|||||||||    |        ||| ||||      ||||  |||||||    || | |||  ||  |  |  ||  |  ||||      ||||| | || || || |  ||| |||||||||| || |  ||||| |||||||||||||||||||||||||| |||  |||||| ||||| || ||||||||||
gtaagtgtgataaatttggtccaagaagtat-----aatattattcgtgcattatgcttactgttggtgttcctctttccatgaccaacttgcagATCGAGGGACCTCAACTATTGCAGCATGGTTTTAACGATGCAATTGCAAAAGTAGGCTTGACAAAGTTCGTTTCTGACCTTTTCTTCGTGGGACTGTTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211010423|gb|FL349731.1|FL349731
EST:     AATTGCTCTCATTGTTTGCATTCCGCCTGCAGTGATC                         TTTGAAGGGCCCCGGCTAATGCAGCATGGATTCAGTGATGCCATTGCAAAA
genomic: AATTGCTCTCATTGTTTGCATTCCGCCTGCAGTGATCgtaagtgtgg ... gattgtgcagTTTGAAGGGCCCCGGCTAATGCAGCATGGATTCAGTGATGCCATTGCAAAA
EST: gi|32851134|gb|CD990815.1|CD990815
EST:     CTTACATTTCAATAATTGCTCTCATTGTTTGCATTCCGCCTGCAGTGATC                         TTTGAAGGGCCCCGGCTAATGCAGCATGGATTCAGTGATGCCATTGCAAAA
genomic: CTTACATTTCAATAATTGCTCTCATTGTTTGCATTCCGCCTGCAGTGATCgtaagtgtgg ... gattgtgcagTTTGAAGGGCCCCGGCTAATGCAGCATGGATTCAGTGATGCCATTGCAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataggattcgtgggccatacatacaattttaatggtccatatatgattgtgcagTTTGAAGGGCCCCGGCTAATGCAGCATGGATTCAGTGATGCCATTGCAAAAGTAGGCTTGACAAAGTTTGTTAGTGACCTATTCTTGGTTGGACTGTTCT
                           ttttaat  putative branch site (score: 3)
                 atacatacaattttaa  TA-rich tract