1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtctgttgtttacgatttgctctcttgtcttaaccatccttctaatcgtttctggcattgcagACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTCATTGTTTGCATTCCGCCTGCAGTGATC
species | Zea mays |
transcript | GRMZM2G070605_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATCAAACATCTCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCATG ACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTCEST: gi|32925288|gb|CF030100.1|CF030100
genomic: TATCAAACATCTCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCATGgtctgttgtt ... ggcattgcagACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTC
EST: TATCAAACATCTCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCATG ACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTCEST: gi|213168524|gb|FM182487.1|FM182487
genomic: TATCAAACATCTCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCATGgtctgttgtt ... ggcattgcagACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTC
EST: TATCAAACATCTCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCATG ACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTCEST: gi|116820056|gb|EC863241.1|EC863241
genomic: TATCAAACATCTCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCATGgtctgttgtt ... ggcattgcagACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTC
EST: TATCAAACATCCCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCATG ACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTCEST: gi|32925201|gb|CF030013.1|CF030013
genomic: TATCAAACATCTCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCATGgtctgttgtt ... ggcattgcagACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTC
EST: TATCAAACATCTCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCACG ACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTCEST: gi|91050012|gb|EB160430.1|EB160430
genomic: TATCAAACATCTCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCATGgtctgttgtt ... ggcattgcagACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTC
EST: TATCAAACATCTCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCATG ACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTCEST: gi|32925598|gb|CF030410.1|CF030410
genomic: TATCAAACATCTCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCATGgtctgttgtt ... ggcattgcagACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTC
EST: TATCAAACATCTCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCATG ACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTC
genomic: TATCAAACATCTCATTCACCTACAGGAGCATTTATTCCAAGAAAGCCATGgtctgttgtt ... ggcattgcagACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTC
tttacgatttgctctcttgtcttaaccatccttctaatcgtttctggcattgcagACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTCATTGTTTGCATTCCGCCTGCAGTGATC
ttctaat putative branch site (score: 591)
ttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgttgtttacgatttgctctcttgtcttaaccatccttctaatcgtttctggcattgcagACTGACATGGATAGCACCAACGTGTATGCTTACATTTCAATAATTGCTCTCATTGTTTGCATTCCGCCTGCAGTGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG