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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaatctccctgtcgctgtgtatatgtgcatacagcggtgtgctgcagctctttcctgtgacactttgtctaaccatcttaaaaaccacctatattcattttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATTTCTGCATCCAGTTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTA

Basic information

species Zea mays
transcript GRMZM2G070422_T03
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070422_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os08g23810.2 (Oryza sativa), 3'ss of exon 7
gtacaatctccctgtcgctgtgtatatgtgcatacagcggtgtgctgcagctctttcctgtgacactttgtctaaccatcttaaaaaccacctatattcattttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATTTCTGCATCCAGTTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTA
||| | |  | ||| |  | |   | ||||| ||| ||   ||| || |  | ||  |  | ||   ||       || || ||  | ||||||  |   |||   ||||||||| || ||  | ||||| || ||||||||||| |||||||| ||| | || ||||| ||||||||||  || || ||||||||||||||||||||||
gtatagtgcctctgcctatattcctctgtgcttactgcta-gtgatgaaattattgtccat-acgtgttacgctttcaact-aatgatcacctacctctgttt---gaagGTAACAAAACCACTATTGGAGACATCAAGAAGAGGGTATCTTGCTGCACTGTCAGCATCGAGTTACTCCTTCGTCTCTTTGCTTCAGCACTTCCTTCCTA

upper sequence: GRMZM2G070422_T03 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA11G10770.1 (Glycine max), 3'ss of exon 7
gtacaatctccctgtcgctgtgtatatgtgcatacagcggtgtgctgcagctctttcctgtgacactttgtctaaccatcttaaaaaccacctatattcattttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATTTCTGCATCCAGTTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTA
                     ||| |  |  || ||    |  ||        | |  | ||| | || || ||     ||| || |  |  || | ||   |  |  |||| || || || |||||||| || ||  | | ||| |||||||| ||||| |||||||| ||||||||||||||||| || ||  |||| || ||||| |
---------------------gtaca-ataaattcattaataagcattgaagttcttttatga-atttggtata--tgactttaataaaaagtaaactc---tgatatagGTGACCAAACCATTGTTGGAGACATCTCGGAAAGGATATCTTGCTGCAATATCTGCATCTAGTTACTCCTATGTTTCTTTACTCAAGCATTTTCTTCCAA

upper sequence: GRMZM2G070422_T03 (Zea mays), 3'ss of exon 7
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 7
gtacaatctccctgtcgctgtgtatatgtgcatacagcggtgt--gctgcagctctttcctgtgacactttgtctaaccatcttaaaaaccacctatattcattttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATTTCTGCATCCAGTTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTA
                                ||| |   ||   | ||      | ||   ||||  ||  | |    |  ||| ||      || |    | ||    |||| || |||||| ||||||| || || |||| ||| |||||||||||||| |||||||| ||||||||||| ||||| || ||  ||   ||| ||||||
-------------------------------gtactgttttgctggttgtgatcttatcagttgaccattcattttggtactttacaag-----taaacatctcttaaatagGTGACCAAGCCTCTGTTGGAGACATCCAGAAAAGGTTATCTTGCGGCAATATCTGCATCAAGTTACTCCTACGTTTCTTTACTCAAGTGTTTCATTCCTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211267877|gb|FL003942.1|FL003942
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|32914780|gb|CF019592.1|CF019592
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCGAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|67017641|gb|CO446390.1|CO446390
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAAGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|31356384|gb|CD440741.1|CD440741
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|6526869|gb|AW216132.1|AW216132
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|31361470|gb|CD445827.1|CD445827
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|67018992|gb|CO447741.1|CO447741
EST:     TTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCCAGAG                         -TAACGAAGCCTTTGTTGGAAACCTCAAGAAAGAG-CTATCTTGCNGCAA
genomic: TTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCC-AGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAA-GAGGCTATCTTGCGGCAA
EST: gi|67019739|gb|CO448488.1|CO448488
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAAGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|7162427|gb|AW520049.1|AW520049
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|84980240|gb|DW530589.1|DW530589
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|71766309|gb|DR964246.1|DR964246
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|31354494|gb|CD438851.1|CD438851
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATT
EST: gi|31353471|gb|CD437828.1|CD437828
EST:     ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAG                         GTAACGAAGCCTTTCGT-GGAAACCTCAAGAAGAGGCTATCTTGCGGCAAT
genomic: ATTTTGGCAGCATTGACATACTAGTGCATTCTCTTGCTAATGGCCCAGAGgtacaatctc ... ttttgtgaagGTAACGAAGCCTTT-GTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgtgacactttgtctaaccatcttaaaaaccacctatattcattttgtgaagGTAACGAAGCCTTTGTTGGAAACCTCAAGAAGAGGCTATCTTGCGGCAATTTCTGCATCCAGTTACTCCTATGTTTCATTGCTTCAGCACTTCCTTCCTA
              gtctaac  putative branch site (score: 2)
                                         ttcatttt  putative PPT
                                     tatattcattttgt  TA-rich tract