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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagctgtagcctatcacattttaaatttgttctcactttctacaacttaattttttcttgttttcttttaccgaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG

Basic information

species Zea mays
transcript GRMZM2G070113_T04
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070113_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os05g36120.1 (Oryza sativa), 3'ss of exon 8
gtatgagctgtagcctatcacattttaaatttgttctcactttctacaacttaattttttcttgttttcttttaccgaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
|||||| |  |  |   ||  | || |||||| ||   | |||   |||  | |||||  ||||||| ||| ||       | |||||| || ||||||||||||||||||||||| || || |||||
gtatgacccatgactagtcttagttgaaatttattt--atttttctcaatcttatttt--cttgtttccttgtat------ttcagTCTAAGCGAACTGCAAGTCCATTACAACAATGATCGTTCTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttctcactttctacaacttaattttttcttgttttcttttaccgaaaatccagTCTCAGTGAACTGCAAGTCCATTACAACAACGACCGATCTAG
                       ttttttcttgttttct  CT-rich tract
                aacttaattttttctt  TA-rich tract