1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagcatagttctcagcggtttgccaaatatactatttcttaagaataataaaatctgattgatatgttatataatttgcttcttaaatatattttctttgcagGTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATTGCTTTTGTTGAGTTTGTTCAT
species | Zea mays |
transcript | GRMZM2G069816_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTTACTCAATTAGATGTAAAGHAATTCTTTGAAGAACTTTGCGGTGAG GTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATNGCTEST: gi|78092729|gb|DV521103.1|DV521103
genomic: GTTACTCAATTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAGgtgagcatag ... ttctttgcagGTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATTGCT
EST: GTTACTCAATTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG GTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATTGCTEST: gi|149096649|gb|EE182415.2|EE182415
genomic: GTTACTCAATTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAGgtgagcatag ... ttctttgcagGTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATTGCT
EST: GTTACTCAATTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG GTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATTGCTEST: gi|60352077|gb|DN219050.1|DN219050
genomic: GTTACTCAATTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAGgtgagcatag ... ttctttgcagGTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATTGCT
EST: GTTACTCAATTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG GTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATTGCTEST: gi|149097331|gb|EE183163.2|EE183163
genomic: GTTACTCAATTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAGgtgagcatag ... ttctttgcagGTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATTGCT
EST: GTTACTCAATTAGATGTAAAGAAATTCTTTTGA-GAACTTTGCGGTGAG GTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATTGCTEST: gi|211064466|gb|FK995272.1|FK995272
genomic: GTTACTCAATTAGATGTAAAGAAATTCTTT-GAAGAACTTTGCGGTGAGgtgagcatag ... ttctttgcagGTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATTGCT
EST: GTTACTCAATTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG GTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATTGCTEST: gi|78092728|gb|DV521102.1|DV521102
genomic: GTTACTCAATTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAGgtgagcatag ... ttctttgcagGTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATTGCT
EST: GTTACTCAATTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAG GTCTCTCGGTTGAGACTTTTAGGAGACAATGTACATTCCACAAGGATTGCT
genomic: GTTACTCAATTAGATGTAAAGAAATTCTTTGAAGAACTTTGCGGTGAGgtgagcatag ... ttctttgcagGTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATTGCT
taaaatctgattgatatgttatataatttgcttcttaaatatattttctttgcagGTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATTGCTTTTGTTGAGTTTGTTCAT
gattgat putative branch site (score: 154)
tattttcttt putative PPT
attgatatgttatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcatagttctcagcggtttgccaaatatactatttcttaagaataataaaatctgattgatatgttatataatttgcttcttaaatatattttctttgcagGTCTCTCGGTTGAGACTTCTAGGAGACAATGTACATTCCACAAGGATTGCTTTTGTTGAGTTTGTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA