1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tagatctttgtagacattcatttgttctcatgcaattcctgttggtttcatacttgttatgtggcaacacccattacattataattctgtgcaatttcagAGGTGATCACTTGTGCGGAGTTCCATCCAACTCACTGTAATACACTAGCATATAGTAGCTCAAAGGGTACTATTCGGCTTATTGATCTGCGACAGTCAGC
species | Zea mays |
transcript | GRMZM2G069631_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGCTTTAACATTGTTGATGTGAAACCTGCAAACATGGAGGATCTAACTG AGGTGATCACTTGTGCGGAEST: gi|211374954|gb|FL429396.1|FL429396
genomic: GAGCTTTAACATTGTTGATGTGAAACCTGCAAACATGGAGGATCTAACTGgtaaactttt ... gcaatttcagAGGTGATCACTTGTGCGGA
EST: GAGCTTTAACATTGTTGATGTGAAACCTGCAAACATGGAGGATCTAACTG AGGTGATCACTTGEST: gi|211227826|gb|FL399539.1|FL399539
genomic: GAGCTTTAACATTGTTGATGTGAAACCTGCAAACATGGAGGATCTAACTGgtaaactttt ... gcaatttcagAGGTGATCACTTG
EST: GAGCTTTAACATTGTTGATGTGAAACCTGCAAACATGGAGGATCTAACTG AGGTGATCACTTGTGCGGAGTTCCATCCAACTCACTGTAATACACTAGCATEST: gi|67012325|gb|CO441074.1|CO441074
genomic: GAGCTTTAACATTGTTGATGTGAAACCTGCAAACATGGAGGATCTAACTGgtaaactttt ... gcaatttcagAGGTGATCACTTGTGCGGAGTTCCATCCAACTCACTGTAATACACTAGCAT
EST: AGCTTTTACATTGNTTGATGTGAA-CCTGCANACATGGAAGATCTTACTG GEST: gi|67012325|gb|CO441074.1|CO441074
genomic: AGCTTTAACATTG-TTGATGTGAAACCTGCAAACATGGAGGATCTAACTGgtaaactttt ... gcaatttcag-
EST: AGCTTTTACATTGNTTGATGTGAA-CCTGCANACATGGAAGATCTTACTG GEST: gi|71772341|gb|DR970277.1|DR970277
genomic: AGCTTTAACATTG-TTGATGTGAAACCTGCAAACATGGAGGATCTAACTGgtaaactttt ... gcaatttcag-
EST: GAGCTTTAACATTGTTGATGTGAAACCTGCAAACATGGAGGATCTAACTG AGGTGATCACTTGTGCGGAGTTCCATCCAACTCACTGTAATACACTAGCAT
genomic: GAGCTTTAACATTGTTGATGTGAAACCTGCAAACATGGAGGATCTAACTGgtaaactttt ... gcaatttcagAGGTGATCACTTGTGCGGAGTTCCATCCAACTCACTGTAATACACTAGCAT
tttcatacttgttatgtggcaacacccattacattataattctgtgcaatttcagAGGTGATCACTTGTGCGGAGTTCCATCCAACTCACTGTAATACACTAGCATATAGTAGCTCAAAGGGTACTATTCGGCTTATTGATCTGCGACAGTCAGC
attacattataattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagatctttgtagacattcatttgttctcatgcaattcctgttggtttcatacttgttatgtggcaacacccattacattataattctgtgcaatttcagAGGTGATCACTTGTGCGGAGTTCCATCCAACTCACTGTAATACACTAGCATATAGTAGCTCAAAGGGTACTATTCGGCTTATTGATCTGCGACAGTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - -acattca
- - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - -cctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacacc