1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgctttgtgaccgctgacaaatgtgggacctgatgcatcatcgcccattttgcgctcacttgactgttcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGCACGATGGAGGTGCAGGACTGCGGGCACCAGATGTGCGCGCCGTGCACGC
species | Zea mays |
transcript | GRMZM2G069162_T03 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGTCCTCAGAT GCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGCEST: gi|93016129|gb|EB641649.1|EB641649
genomic: CGTCCTCAGATgtatgctttg ... tcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGC
EST: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGAT GCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGCEST: gi|50324903|gb|CO520029.1|CO520029
genomic: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGATgtatgctttg ... tcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGC
EST: CGACGCCATCGACGACGCGTCCTCAGAT GCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGCEST: gi|149071937|gb|EE160324.2|EE160324
genomic: CGACGCCATCGACGACGCGTCCTCAGATgtatgctttg ... tcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGC
EST: ACGCCGACGCCATCGACGACGCGTCCTCAGAT GCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGCEST: gi|74232732|gb|DT640646.1|DT640646
genomic: ACGCCGACGCCATCGACGACGCGTCCTCAGATgtatgctttg ... tcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGC
EST: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGAT GCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGCEST: gi|71772501|gb|DR970433.1|DR970433
genomic: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGATgtatgctttg ... tcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGC
EST: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGAT GCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGCEST: gi|74240093|gb|DT648007.1|DT648007
genomic: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGATgtatgctttg ... tcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGC
EST: CGACGCGTCCTCAGAT GCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGCEST: gi|89251592|gb|DY623378.1|DY623378
genomic: CGACGCGTCCTCAGATgtatgctttg ... tcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGC
EST: ACGCGAGCGACGCCGCCGACGCCGACGCCATTGACGACGGGTCCTCAGAT GCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGCEST: gi|101399477|gb|EB821611.1|EB821611
genomic: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGATgtatgctttg ... tcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGC
EST: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGAT GCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGCEST: gi|149069735|gb|EE158122.2|EE158122
genomic: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGATgtatgctttg ... tcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGC
EST: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGAT GCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGCEST: gi|93281560|gb|EB673824.1|EB673824
genomic: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGATgtatgctttg ... tcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGC
EST: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGAT GCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGCEST: gi|149085043|gb|EE174552.2|EE174552
genomic: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGATgtatgctttg ... tcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGC
EST: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGAT GCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGCEST: gi|76013281|gb|DT940451.1|DT940451
genomic: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGATgtatgctttg ... tcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGC
EST: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGAT GCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGC
genomic: ACGCGAGCGACGCCGCCGACGCCGACGCCATCGACGACGCGTCCTCAGATgtatgctttg ... tcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGC
gtgggacctgatgcatcatcgcccattttgcgctcacttgactgttcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGCACGATGGAGGTGCAGGACTGCGGGCACCAGATGTGCGCGCCGTGCACGC
ttcactc CT-rich tract
atttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctttgtgaccgctgacaaatgtgggacctgatgcatcatcgcccattttgcgctcacttgactgttcactcacagGCCAGCGCCAGCGACGCGGAGCTGTGCTGCATCTGCTTCGACCAGGCGTGCACGATGGAGGTGCAGGACTGCGGGCACCAGATGTGCGCGCCGTGCACGC
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