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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtcgttctttactccaaacacaatctcccttctgtacagctaaaggtttgcagaaatggcaattcaaccagcacaatatatcgttggctcatcgcaatggctgctaacagGTCTTTCGGCTGAGGTTGCTTGGCGACTACCATCATTCTACCCGCATCGCTTTTGTGGAATTCGTGATG

Basic information

species Zea mays
transcript GRMZM2G069102_T01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069102_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 3'ss of exon 7
gttggtcgttctttactccaaacacaatctcccttctgtacagctaaaggtttgcagaaatggcaattcaaccagcacaatatatcgttggctcatcgcaatggctgcta-acagGTCTTTCGGCTGAGGTTGCTTGGCGACTACCATCATTCTACCCGCATCGCTTTTGTGGAATTCGTGATG
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gttggtgatttgtcattccttatgtcaac-cttttcttcacaatca------tactgaaatg-caattcaa--ggaacaac------ttccctcattgcaataccacctttacagGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTGGAGTTTGTGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94472396|gb|EB701354.1|EB701354
EST:     GTCACTCAAGCAGATCTAAAATTATTCTTTGAGTCCATATGTGGTGAG                         GTCTTTCGGCTGAGGTTGCTTGGCGACTACCATCATTCTACCCGCATCGCT
genomic: GTCACTCAAGCAGATCTAAAATTATTCTTTGAGTCCATATGTGGTGAGgttggtcgtt ... ctgctaacagGTCTTTCGGCTGAGGTTGCTTGGCGACTACCATCATTCTACCCGCATCGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggcaattcaaccagcacaatatatcgttggctcatcgcaatggctgctaacagGTCTTTCGGCTGAGGTTGCTTGGCGACTACCATCATTCTACCCGCATCGCTTTTGTGGAATTCGTGATG
                 acaatatat  TA-rich tract