1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aacactaaaaggcaaaatcacgttggcgattacctaaactaaagcttgtgcgcagaaaatattgctgatactttagtatatgcttctgtttgtgttccagCACACCACTTCTGGCTGCAATTCGCAAGGACGATTCACCAGATCTGAGCGAAGTCAGAAGGATATTGCAAGACCATCTGAAG
species | Zea mays |
transcript | GRMZM2G068913_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATGTCTTTGGTGATGCCGCTGATAATCTATCCACCCCCTTCACATTGAG CACACCACTTCTGGCTGCAATTCGCAAGGACGATTCACCAGATCTGAGCGAEST: gi|67032024|gb|CO460773.1|CO460773
genomic: GATGTCTTTGGTGATGCCGCTGATAATCTATCCACCCCCTTCACATTGAGgtaccttaag ... tgtgttccagCACACCACTTCTGGCTGCAATTCGCAAGGACGATTCACCAGATCTGAGCGA
EST: GATGTCTTTGGTGATGCCGCTGATAATCTATCCACCCCCTTCACATTGAG CACACCACTTCTGGCTGCAATTCGCAAGGACGATTCACCAGATCTGAGCGAEST: gi|31909435|gb|CD650917.1|CD650917
genomic: GATGTCTTTGGTGATGCCGCTGATAATCTATCCACCCCCTTCACATTGAGgtaccttaag ... tgtgttccagCACACCACTTCTGGCTGCAATTCGCAAGGACGATTCACCAGATCTGAGCGA
EST: CGCTGATAATCTATCCACCCCCTTCACATTGAG CACACCACTTCTGGCTGCAATTCGCAAGGACGATTCACCAGATCTGAGCGAEST: gi|31909437|gb|CD650918.1|CD650918
genomic: CGCTGATAATCTATCCACCCCCTTCACATTGAGgtaccttaag ... tgtgttccagCACACCACTTCTGGCTGCAATTCGCAAGGACGATTCACCAGATCTGAGCGA
EST: GATGTCTTTGGTGATGCCGCTGATAATCTATCCACCCCCTTCACATTGAG CACACCACTTCTGGCTGCAATTCGCAAGGACGATTCACCAGATCTGAGCGA
genomic: GATGTCTTTGGTGATGCCGCTGATAATCTATCCACCCCCTTCACATTGAGgtaccttaag ... tgtgttccagCACACCACTTCTGGCTGCAATTCGCAAGGACGATTCACCAGATCTGAGCGA
ttgtgcgcagaaaatattgctgatactttagtatatgcttctgtttgtgttccagCACACCACTTCTGGCTGCAATTCGCAAGGACGATTCACCAGATCTGAGCGAAGTCAGAAGGATATTGCAAGACCATCTGAAG
tgctgat putative branch site (score: 55)
cttctgttt putative PPT
atactttagtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacactaaaaggcaaaatcacgttggcgattacctaaactaaagcttgtgcgcagaaaatattgctgatactttagtatatgcttctgtttgtgttccagCACACCACTTCTGGCTGCAATTCGCAAGGACGATTCACCAGATCTGAGCGAAGTCAGAAGGATATTGCAAGACCATCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
aacacta
- - - - - - caaaatca
- - - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - cttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - -gcagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat