Sequence
atgc intronic sequence ATGC exonic sequencegtgtgttcttctgaggattatttatctggatattgctcttggtagtttgttcaaactaatgatggaaatacttatataattctactttgcagCCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G068755_T03 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g60040.1 (Oryza sativa), 3'ss of exon 7
gtgtgttcttctgaggattatttatctggatattgctcttggtagtttgttcaaactaatgatggaaatacttatataattctactttgcagCCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTG
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------------gtttgttgcttagctgaacattttcagtgttagttcatttctattacctacatgaatactgacacaattat-ttgtccagCCCCTATGGAGATCGATGAATACGATCTTGTTGATCCTGTTGATATCTTAACACCACTTGAGAAGTCTGGATTTTGGGATGGTGTG
upper sequence: GRMZM2G068755_T03 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA15G29520.1 (Glycine max), 3'ss of exon 4
-----------------------gtgtgttcttctgaggattatttatctggatattgctcttggtagtttgttcaaactaatgatggaaatacttatataattctactttgcagCCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTG
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gtatgtaaaatttagtatctggagtatgtttttctttttctcagacatgctaacatgtctctc----ctttgtacta-ctaatattctcatttttcaaatactttgattat-cagCTCCTCAAGAAATCGATGAATATGAACTTGTTGATCCTGTTGATATATTGACTCCTTTAGAGAAGTCAGGATTTTGGGATGGAGTT
upper sequence: GRMZM2G068755_T03 (Zea mays), 3'ss of exon 7
lower sequence: Vv10s0116g00490.t01 (Vitis vinifera), 3'ss of exon 7
----------------------------------------------------------------------------------gtgtgttcttctgaggattat------------ttatctgg--atattgctct----tggtagtttgttcaaactaatgatggaaatactt-atata-attctactttgcagCCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTG
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gtatgccatcaactctatggaaacctaggagtgcatcttattgacttatttattttttattcttatttgtaataaaatatgactgtattaatttggggacaaccagcattgtccattatttgagcatattaatttcatatgttagtttact-aatgtgctcatacttgcacctgatacatattgcatctgtcagCTCCTCAGGAAATAGATGAATATGAACTTGTCGATCCTGTTGATATATTGACCCCTTTAGAAAAGTCAGGATTTTGGGATGGAGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211517040|gb|FL438272.1|FL438272EST: TGTGCCCGAGACAAGCGGGGCTAACACTTCTGAAGAGGCAGCGACAGATG CCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAA
genomic: TGTGCCCGAGACAAGCGGGGCTAACACTTCTGAAGAGGCAGCGACAGATGgtgtgttctt ... tactttgcagCCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAA
EST:
gi|18963448|gb|BM660440.1|BM660440EST: TGTGCCCGAGACAAGCGGGGCTAACACTTCTGAAGAGGCAGCGACAGATG CCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAA
genomic: TGTGCCCGAGACAAGCGGGGCTAACACTTCTGAAGAGGCAGCGACAGATGgtgtgttctt ... tactttgcagCCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAA
EST:
gi|32934909|gb|CF039721.1|CF039721EST: TGTGCCCGAGACAAGCGGGGCTAACACTTCTGAAGAGGCAGCGACAGATG TCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAA
genomic: TGTGCCCGAGACAAGCGGGGCTAACACTTCTGAAGAGGCAGCGACAGATGgtgtgttctt ... tactttgcagCCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAA
EST:
gi|32795621|gb|CD947857.1|CD947857EST: TGTGCCCGAGACAAGCGGGGCTAACACTTCTGAAGAGGCAGCGACAGATG CCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTA
genomic: TGTGCCCGAGACAAGCGGGGCTAACACTTCTGAAGAGGCAGCGACAGATGgtgtgttctt ... tactttgcagCCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTA
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
48 (upstream exon),
49 (downstream exon)
Score:
98ATCCGAACAAGAAAAGGAACTTGAGGAGGAGTCTGTGCCCGAGACAAGCGGGGCTAACACTTCTGAAGAGGCAGCGACAGATGgtgtgttctt ... tactttgcagCCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTG
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
38ATCCGAACAAGAAAAGGAACTTGAGGAGGAGTCTGTGCCCGAGACAAGCGGGGCTAACACTTCTGAAGAGGCAGCGACAGATGgtgtgttctt ... tactttgcagCCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTG
Block sizes:
46 (upstream exon),
49 (downstream exon)
Score:
36ATCCGAACAAGAAAAGGAACTTGAGGAGGAGTCTGTGCCCGAGACAAGCGGGGCTAACACTTCTGAAGAGGCAGCGACAGATGgtgtgttctt ... tactttgcagCCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTG
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
88ATCCGAACAAGAAAAGGAACTTGAGGAGGAGTCTGTGCCCGAGACAAGCGGGGCTAACACTTCTGAAGAGGCAGCGACAGATGgtgtgttctt ... tactttgcagCCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttggtagtttgttcaaactaatgatggaaatacttatataattctactttgcagCCCCTGTGGAGATCGATGAATATGACCTTGTTGATCCTGTAGACATTTTAACCCCACTAGAAAAGTCTGGATTCTGGGACGGTGTG
aactaat putative branch site (score: 88)
ttctacttt putative PPT
aaatacttatataatt TA-rich tract