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gtaaatatatacgtacaagtatatactgctgtcaatgcaacaatagagctcacacagctgtgttctttttttccagACAGAAGCTGATAAAAAACTCCTTGCCGAAAAAGGTGGCATTCCTATTGGTATTGGGAAAAATTCATGCATCAGGAGAGCAATCATTGACAAGAATGCTC
species | Zea mays |
transcript | GRMZM2G068506_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGGTGCTATCATAGAGGACAGTTTACTAATGGGTGCGGACTACTATGAG ACAGAAGCTGATAAAAAACTCCTTGCCGAAAAAGGTGGCATTCCTATTGGTEST: gi|32941027|gb|CF045846.1|CF045846
genomic: AAGGTGCTATCATAGAGGACAGTTTACTAATGGGTGCGGACTACTATGAGgtaaatatat ... ttttttccagACAGAAGCTGATAAAAAACTCCTTGCCGAAAAAGGTGGCATTCCTATTGGT
EST: AAGGTGCTATCATAGAGGACAGTTTACTAATGGGTGCGGACTACTATGAG ACAGAAGCTGATAAAAAACTCCTTGCCGAAAAAGGTGGCATTCCTATTGGTEST: gi|32838360|gb|CD978038.1|CD978038
genomic: AAGGTGCTATCATAGAGGACAGTTTACTAATGGGTGCGGACTACTATGAGgtaaatatat ... ttttttccagACAGAAGCTGATAAAAAACTCCTTGCCGAAAAAGGTGGCATTCCTATTGGT
EST: AAGGTGCTATCATAGAGGACAGTTTACTAATGGGTGCGGACTACTATGAG ACAGAAGCTGATAAAAAACTCCTTGCCGAAAAAGGTGGCATTCCTATTGGTEST: gi|32836730|gb|CD976408.1|CD976408
genomic: AAGGTGCTATCATAGAGGACAGTTTACTAATGGGTGCGGACTACTATGAGgtaaatatat ... ttttttccagACAGAAGCTGATAAAAAACTCCTTGCCGAAAAAGGTGGCATTCCTATTGGT
EST: AAGGTGCTATCATAGAGGACAGTTTACTAATGGGTGCGGACTACTATGAG ACAGAAGCTGATAAAAAACTCCTTGCCGAAAAAGGTGGCATTCCTATTGGT
genomic: AAGGTGCTATCATAGAGGACAGTTTACTAATGGGTGCGGACTACTATGAGgtaaatatat ... ttttttccagACAGAAGCTGATAAAAAACTCCTTGCCGAAAAAGGTGGCATTCCTATTGGT
tatactgctgtcaatgcaacaatagagctcacacagctgtgttctttttttccagACAGAAGCTGATAAAAAACTCCTTGCCGAAAAAGGTGGCATTCCTATTGGTATTGGGAAAAATTCATGCATCAGGAGAGCAATCATTGACAAGAATGCTC
agctcac putative branch site (score: 3)
ctgtgttctttttttc putative PPT
ttcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatatatacgtacaagtatatactgctgtcaatgcaacaatagagctcacacagctgtgttctttttttccagACAGAAGCTGATAAAAAACTCCTTGCCGAAAAAGGTGGCATTCCTATTGGTATTGGGAAAAATTCATGCATCAGGAGAGCAATCATTGACAAGAATGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA