1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagccgcgagcgcgcacactgtttcttctgctctggaattatctttggctctgtttctttgcctaaactttgtctgctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGCCTCCTGGCCGGCGACTTCACCTCCAACCTCAAGCTCCTGCAGAATTACC
species | Zea mays |
transcript | GRMZM2G068392_T04 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAG GAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGCEST: gi|148935026|gb|EC879067.2|EC879067
genomic: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcg ... ctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
EST: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAG GAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGCEST: gi|18164380|gb|BM334219.1|BM334219
genomic: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcg ... ctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
EST: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAG GAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGCEST: gi|78076513|gb|DV504947.1|DV504947
genomic: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcg ... ctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
EST: ACACCATTCACATTTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAG GAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGCEST: gi|71309792|gb|DR791178.1|DR791178
genomic: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcg ... ctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
EST: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAG GAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGCEST: gi|71309794|gb|DR791179.1|DR791179
genomic: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcg ... ctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
EST: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAG GAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGCEST: gi|18171551|gb|BM341391.1|BM341391
genomic: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcg ... ctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
EST: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAG GAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGCEST: gi|211178282|gb|FL421437.1|FL421437
genomic: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcg ... ctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
EST: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAG GAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCACEST: gi|18170879|gb|BM340719.1|BM340719
genomic: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcg ... ctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
EST: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAG GAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGCEST: gi|60342736|gb|DN209709.1|DN209709
genomic: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcg ... ctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
EST: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAG GAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
genomic: ACACCATTCACATCTGGGACACACTATTAAGTGATCCTGGTGGCCCCCAGgtgagccgcg ... ctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGC
tctggaattatctttggctctgtttctttgcctaaactttgtctgctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGCCTCCTGGCCGGCGACTTCACCTCCAACCTCAAGCTCCTGCAGAATTACC
gcctaaa putative branch site (score: 3)
aattatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagccgcgagcgcgcacactgtttcttctgctctggaattatctttggctctgtttctttgcctaaactttgtctgctgaacacagGAAACCTTGCTCAGAATATGCTGCGCGATGCTGATCCTTGTCCGGAAGCGCCTCCTGGCCGGCGACTTCACCTCCAACCTCAAGCTCCTGCAGAATTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG