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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taagtcttgagaagaatcctagagaggatttaaatttctaaactagcccttagagtgtcatctttccgcaagcatcgtacccaactgttgctctctgcagGTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAGGAATTCAACTTCGCCGACACCATTCACATCTGGGACACACTATTAAGTG

Basic information

species Zea mays
transcript GRMZM2G068392_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068392_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g68010.3 (Oryza sativa), 3'ss of exon 7
taagtcttgagaagaatcctag-agaggatttaaatttctaaactagcccttagagtgtcatctttccgcaagcatcgtaccca-actgttgct--ctctgcagGTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAGGAATTCAACTTCGCCGACACCATTCACATCTGGGACACACTATTAAGTG
    |  |  |||  ||  ||| ||   ||  | | | ||      ||  |     | |   | | | ||||   |   ||    |  ||| ||   ||||||| ||||||| ||||||||||||||| | ||||| ||  ||||| | |||||||| |||||||| || ||||| |||||||| |||||||||||||||||||
----tgctaggaaacattgtagcaggaaatccacactactgccactgctatccttatttgtgcctgcagcaaaattaacacaagcatggtttctgtttctgcagATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAGGAGTTCAACTTTGCTGACACTATTCACATATGGGACACACTATTAAGTG

upper sequence: GRMZM2G068392_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA05G28660.1 (Glycine max), 3'ss of exon 7
taagtcttgagaagaatcctag-agaggatttaaatttctaaactagcccttag--agtgt-catctttccgcaagcatcgtacccaactgttgctctctgcagGTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAGGAATTCAACTTCGCCGACACCATTCACATCTGGGACACACTATTAAGTG
    | |||     |  |||    || |||| ||     |  | | ||  || |  | ||  ||  ||  |  |    || ||       |||      | ||||| ||||| || ||||| ||||| || ||||| ||  | |||||||| ||||||||||| || ||||||| | ||||||| ||||| || || ||||| |
--ttttttgcatgcacacctgctggatgattcaa--ccatgtatttgcttttggctattgaacagtttatcagattgctcatattttctggttctgaatttcagGTCAATCCTCAATTCTATGCATTTAGGTGGATTACTCTCCTGCTGACTCAGGAATTCAATTTTGCCGACAGCCTTCACATTTGGGATACTCTTTTAAGCG

upper sequence: GRMZM2G068392_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA08G11760.1 (Glycine max), 3'ss of exon 7
taagtcttgagaagaatcctag-agaggatttaaatt-tctaaactagcccttag--agtgt-catctttccgcaagcatcgtacccaactgttgctctctgcagGTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAGGAATTCAACTTCGCCGACACCATTCACATCTGGGACACACTATTAAGTG
      ||| |   |  |||    || |||| ||    | ||   | ||  || |  | ||  ||  ||  |  | |  || |        |||        ||||| ||||| || ||||| ||||| || ||||| ||  | |||||||| ||||||||||| || || |||| | ||||||| |||||||| || ||||| |
-----tttgcgtgcacacctgctggatgattcaaccaatgtatttttgcttttggttattgaacagtttatcagatgggtcatgttttctggttctgaatgtcagGTCAATCCTCAATTCTATGCATTTAGGTGGATTACTCTCCTGCTGACTCAGGAATTCAATTTTGCTGACAGCCTTCACATTTGGGACACTCTTTTAAGCG

upper sequence: GRMZM2G068392_T01 (Zea mays), 3'ss of exon 7
lower sequence: PP1S8_313V6.1 (Physcomitrella patens), 3'ss of exon 8
--taagtcttgagaagaatcctagagaggattta-aatttctaaactagcccttagagtgtcatctttccgcaagcatcgtacccaactgttgctctctgcagGTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAGGAATTCAACTTCGCCGACACCATTCACATCTGGGACACACTATTAAGTG
      |  |   ||   |  | |   |   ||| || ||||   ||      |    |   || |    |  || ||   |     || |   | ||  ||||| || ||||| |||||||| |||||||||||||| || ||||| || || || |||||||| || ||  |  |||   | |||||| | ||  | ||| 
cacggatacttgaaatcgtgtttgcttgctcttagaagttctgttctgtgtacttttatagaatgtggttg--aggattaaatt-gcctttatgtgtccacagGTCAACCCCCAATTCTACGCTTTCAGATGGATAACTTTGCTGCTAACGCAAGAGTTCAACTTTGCTGATTCTCTTCGACTTTGGGACTCTCTTCTCAGTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211178282|gb|FL421437.1|FL421437
EST:     TAGCAAAGTATGATGGAGAACTCCAGCAACATCTGGAAATAACTACGGAA                         GTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAG
genomic: TAGCAAAGTATGATGGAGAACTCCAGCAACATCTGGAAATAACTACGGAAgtaagtcttt ... ctctctgcagGTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAG
EST: gi|78076513|gb|DV504947.1|DV504947
EST:     TAGCAAAGTATGATGGAGAACTCCAGCAACATCTGGAAATAACTACGGAA                         GTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAG
genomic: TAGCAAAGTATGATGGAGAACTCCAGCAACATCTGGAAATAACTACGGAAgtaagtcttt ... ctctctgcagGTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAG
EST: gi|60342736|gb|DN209709.1|DN209709
EST:     TAGCAAAGTATGATGGAGAACTCCAGCAACATCTGGAAATAACTACGGAA                         GTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAG
genomic: TAGCAAAGTATGATGGAGAACTCCAGCAACATCTGGAAATAACTACGGAAgtaagtcttt ... ctctctgcagGTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAG
EST: gi|148935026|gb|EC879067.2|EC879067
EST:     TAGCAAAGTATGATGGAGAACTCCAGCAACATCTGGAAATAACTACGGAA                         GTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAG
genomic: TAGCAAAGTATGATGGAGAACTCCAGCAACATCTGGAAATAACTACGGAAgtaagtcttt ... ctctctgcagGTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAG
EST: gi|18164380|gb|BM334219.1|BM334219
EST:     TAGCAAAGTATGATGGAGAACTCCAGCAACATCTGGAAATAACTACGGAA                         GTTAATCCCCATTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAG
genomic: TAGCAAAGTATGATGGAGAACTCCAGCAACATCTGGAAATAACTACGGAAgtaagtcttt ... ctctctgcagGTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAG
EST: gi|71309792|gb|DR791178.1|DR791178
EST:     TAGCAAAGTATGATGGAGAACTCCAGCAACATCTGGAAATAACTACGGAA                         GTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAG
genomic: TAGCAAAGTATGATGGAGAACTCCAGCAACATCTGGAAATAACTACGGAAgtaagtcttt ... ctctctgcagGTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAG
EST: gi|71309794|gb|DR791179.1|DR791179
EST:     TAGCAAAGTATGATGGAGAACTCCAGCAACATCTGGAAATAACTACGGAA                         GTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAG
genomic: TAGCAAAGTATGATGGAGAACTCCAGCAACATCTGGAAATAACTACGGAAgtaagtcttt ... ctctctgcagGTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcccttagagtgtcatctttccgcaagcatcgtacccaactgttgctctctgcagGTTAATCCCCAGTTCTACGCATTCAGATGGATAACCTTACTGCTGACCCAGGAATTCAACTTCGCCGACACCATTCACATCTGGGACACACTATTAAGTG
                                          ttgctctct  CT-rich tract