1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatactactgtgaaatatggtgtcgttttacctttatcttctaatcgtccagcactctagccacaaaactagcaatatagttcacaagtgagtttgcctgtggatttatttctttccttattttttcggcataaatggtgctaagttgaccattcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTATTTTAAACTGGATCAGAGGATAGTCAATTTCTACACAAGAAATGGGGGAG
species | Zea mays |
transcript | GRMZM2G067299_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAG GCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTATEST: gi|149086245|gb|EE175785.2|EE175785
genomic: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAGgtatactact ... tcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTAT
EST: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAG GCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTATEST: gi|60340715|gb|DN207688.1|DN207688
genomic: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAGgtatactact ... tcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTAT
EST: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAG GCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTATEST: gi|32805998|gb|CD958232.1|CD958232
genomic: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAGgtatactact ... tcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTAT
EST: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAG GCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTATEST: gi|60338305|gb|DN205278.1|DN205278
genomic: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAGgtatactact ... tcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTAT
EST: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAG GCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTATEST: gi|60398038|gb|DN230854.1|DN230854
genomic: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAGgtatactact ... tcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTAT
EST: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAG GCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTATEST: gi|88749203|gb|DY533344.1|DY533344
genomic: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAGgtatactact ... tcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTAT
EST: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAG GCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTATEST: gi|78112746|gb|DV531140.1|DV531140
genomic: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAGgtatactact ... tcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTAT
EST: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAG GCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTATEST: gi|71772064|gb|DR970001.1|DR970001
genomic: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAGgtatactact ... tcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTAT
EST: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAG GCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTATEST: gi|94477322|gb|EB706280.1|EB706280
genomic: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAGgtatactact ... tcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTAT
EST: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAG GCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTATEST: gi|94473866|gb|EB702824.1|EB702824
genomic: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAGgtatactact ... tcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTAT
EST: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAG GCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTATEST: gi|211510844|gb|FL479757.1|FL479757
genomic: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAGgtatactact ... tcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTAT
EST: TATGATTCCAGTGTTTCTTGAATCAAGTGAAGCGAACCTATGAGTACAAG GCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTATEST: gi|211182792|gb|FL070443.1|FL070443
genomic: TATGATT-CAGTGTTTCTTGAATC-AGTGAAGCGAACCTATGAGTACAAGgtatactact ... tcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTAT
EST: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAG GCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTAT
genomic: AGTATGATTCAGTGTTTCTTGAATCAGTGAAGCGAACCTATGAGTACAAGgtatactact ... tcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTAT
tttctttccttattttttcggcataaatggtgctaagttgaccattcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTATTTTAAACTGGATCAGAGGATAGTCAATTTCTACACAAGAAATGGGGGAG
agttgac putative branch site (score: 27)
ttcattt putative PPT
ttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatactactgtgaaatatggtgtcgttttacctttatcttctaatcgtccagcactctagccacaaaactagcaatatagttcacaagtgagtttgcctgtggatttatttctttccttattttttcggcataaatggtgctaagttgaccattcatttgcagGCATATTTCCTTGATCTGGATGTGAAACCTCTGGATAAGATGGAGCATTATTTTAAACTGGATCAGAGGATAGTCAATTTCTACACAAGAAATGGGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA