1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgaggccggctgccctgtcgtctgtcgcgatcgatacagccatatgcatcatgcatgcatgggccatgccatgggcacggcagtgatgcatgacttgcgggggttgtactacttacttactcgtgtgcatatggtcgatcgagcacagGTGAAGGTGAGCCGGGAAGGGGCCAAGTGCGACGACGGCGACGTGACGGCGGCGCGCGGCGCGTTCGGGCTGGAGTGGCCCGAGCCCCTCGTCACCTTCG
species | Zea mays |
transcript | GRMZM2G066516_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCATGTCCATCGAGCATTTCATCCTGAGGCTGCCCTACAGCGCCAAGCAG GTGAAGGTGAGCCGGGAAGGGGCCAAGTGCGACGACGGCGACGTGACGGCGEST: gi|149101218|gb|EE187329.2|EE187329
genomic: CCATGTCCATCGAGCATTTCATCCTGAGGCTGCCCTACAGCGCCAAGCAGgtgaggccgg ... tcgagcacagGTGAAGGTGAGCCGGGAAGGGGCCAAGTGCGACGACGGCGACGTGACGGCG
EST: CCATGTCCATCGAGCATTTCATCCTGAGGCTGCCCTACAGCGCCAAGCAG GTGAAGGTGAGCCGGGAAGGGGCCAAGTGCGACGACGGCGACGTGACGGCGEST: gi|67015405|gb|CO444154.1|CO444154
genomic: CCATGTCCATCGAGCATTTCATCCTGAGGCTGCCCTACAGCGCCAAGCAGgtgaggccgg ... tcgagcacagGTGAAGGTGAGCCGGGAAGGGGCCAAGTGCGACGACGGCGACGTGACGGCG
EST: CCATGTCCATCGAGCATTTCATCCTGAGGCTGCCCTACAGCGCCAAGCAG GTGAAGGTGAGCCGGGAAGGGGCCAAGTGCGACGACGGCGACGTGACGGCGEST: gi|149101219|gb|EE187330.2|EE187330
genomic: CCATGTCCATCGAGCATTTCATCCTGAGGCTGCCCTACAGCGCCAAGCAGgtgaggccgg ... tcgagcacagGTGAAGGTGAGCCGGGAAGGGGCCAAGTGCGACGACGGCGACGTGACGGCG
EST: CATGTCCATCGAGCATTTCATCCTGAGGCTGCCCTACAGCNGC-AAGCAG GTGAAGGTGAGCCGGGEST: gi|94478763|gb|EB707721.1|EB707721
genomic: CATGTCCATCGAGCATTTCATCCTGAGGCTGCCCTACAGC-GCCAAGCAGgtgaggccgg ... tcgagcacagGTGAAGGTGAGCCGGG
EST: CCATGTCCATCGAGCATTTCATCCTGAGGCTGCCCTACAGCGCCAAGCAG GTGAAGGTGAGCCGGGAAGGGGCCAAGTGCGACGACGGCGACGTGACGGCGEST: gi|88749193|gb|DY533334.1|DY533334
genomic: CCATGTCCATCGAGCATTTCATCCTGAGGCTGCCCTACAGCGCCAAGCAGgtgaggccgg ... tcgagcacagGTGAAGGTGAGCCGGGAAGGGGCCAAGTGCGACGACGGCGACGTGACGGCG
EST: CCATGTCCATCGAGCATTTCATCCTGAGGCTGCCCTACAGCGCCAAGCAG GTGAAGGTGAGCCGGGAAGGGGCCAAGTGCGACGACGGCGACGTGACGGCGEST: gi|148956148|gb|EC901923.2|EC901923
genomic: CCATGTCCATCGAGCATTTCATCCTGAGGCTGCCCTACAGCGCCAAGCAGgtgaggccgg ... tcgagcacagGTGAAGGTGAGCCGGGAAGGGGCCAAGTGCGACGACGGCGACGTGACGGCG
EST: CCATGTCCATCGAGCATTTCATCCTGAGGCTGCCCTACAGCGCCAAGCAG GTGAAGGTGAGCCGGGAAGGGGCCAAGTGCGACGACGGCGACGTGACGGCG
genomic: CCATGTCCATCGAGCATTTCATCCTGAGGCTGCCCTACAGCGCCAAGCAGgtgaggccgg ... tcgagcacagGTGAAGGTGAGCCGGGAAGGGGCCAAGTGCGACGACGGCGACGTGACGGCG
cttgcgggggttgtactacttacttactcgtgtgcatatggtcgatcgagcacagGTGAAGGTGAGCCGGGAAGGGGCCAAGTGCGACGACGGCGACGTGACGGCGGCGCGCGGCGCGTTCGGGCTGGAGTGGCCCGAGCCCCTCGTCACCTTCG
tacttac putative branch site (score: 18)
ttactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggccggctgccctgtcgtctgtcgcgatcgatacagccatatgcatcatgcatgcatgggccatgccatgggcacggcagtgatgcatgacttgcgggggttgtactacttacttactcgtgtgcatatggtcgatcgagcacagGTGAAGGTGAGCCGGGAAGGGGCCAAGTGCGACGACGGCGACGTGACGGCGGCGCGCGGCGCGTTCGGGCTGGAGTGGCCCGAGCCCCTCGTCACCTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA