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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaaaaaagaacacagaaaatagcatcaaatggattcagactttctttataattacttattatcttggatgactttgaaattttgaattcatttttgcagATTTACATTCTCTTGTACAAGGAAGTTGCTCTTGCTTTGAAAATTAACAGCTTATACAGTAAACAGAGGCTACTTAACATTCATGAAAATGTTAAAGTTC

Basic information

species Zea mays
transcript GRMZM2G066485_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066485_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os05g29050.1 (Oryza sativa), 3'ss of exon 7
-gaaaaaaagaacacagaaaatagcatcaaatggattcagactttctttataattacttattatc-ttggatgact--ttgaaattttgaattcatttttgcagATTTACATTCTCTTGTACAAGGAAGTTGCTCTTGCTTTGAAAATTAACAGCTTATACAGTAAACAGAGGCTACTTAACATTCATGAAAATGTTAAAGTTC
  |  | | ||    | |||  |  || |     |  |    |  ||  ||||  ||  |   |   ||  || ||  |   |||||||     | || ||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| | |||||||||||||||||| ||||| |||||||
ttatcacatgacttgaaaaagcaaaatgagtcaaaaactagatggctc-ataaaaaccgacagttactgactgtctactctgaattttgg---taattatgcagATCTACATTCTTTTGTACAAGGAAGTTGCTCTTGCATTGAAAATCAACAGCTTGTACAGTAAACAAAAGCTACTTAACATTCATGAGAATGTAAAAGTTC

upper sequence: GRMZM2G066485_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 8
---gaaaaaaagaacacag--aaaatagcatcaaatggattcagactttctttataattacttattatcttggatgactttgaaattttgaattcatttttgcagATTTACATTCTCTTGTACAAGGAAGTTGCTCTTGCTTTGAAAATTAACAGCTTATACAGTAAACAGAGGCTACTTAACATTCATGAAAATGTTAAAGTTC
     | ||| | || |||  |  ||     | | |||  | |  | |  |  | | |   |||||  | | |   |  || | ||   | |||  ||  ||||||||||||||||  | ||||| || || ||||||||||||||||| |||||  | || || ||  | | ||| |||| ||||||||| ||||| |  ||  
tagttacaaaggtactcagctatgatgtatgccactgggataatgcatgttcca-attgctttatttccattgtcaagatttacat---ggattt-ttaatgcagATTTACATTCTTCTCTACAAAGAGGTGGCTCTTGCTTTGAAAATCAACAGTGTTTATAGCAAGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTAT

upper sequence: GRMZM2G066485_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 8
gaaaaaaagaacacagaaaatagcatcaaatggattcagactttctttataattacttattatcttggatgactttg------aaattt---tgaattcatttttgcagATTTACATTCTCTTGTACAAGGAAGTTGCTCTTGCTTTGAAAATTAACAGCTTATACAGTAAACAGAGGCTACTTAACATTCATGAAAATGTTAAAGTTC
    |   | |||  | |  |    || ||| | || |   ||||  | ||| |    |     ||  ||||||||       | ||||   ||||||  ||  ||||||||||||||||  | ||||| || || ||||||||||||||||| |||||  | || || ||  | | ||| |||| ||||||||| ||||| |  ||  
tgccactgggacaatgcatgt----tccaattgcttta---tttccatgtaagtgtcaa--gatttacatgactttttaatgcagatttacatgaattttttaatgcagATTTACATTCTTCTCTACAAAGAGGTGGCTCTTGCTTTGAAAATAAACAGTGTTTATAGCAAGAAAAAGCTTCTTAGCATTCATGAGAATGTGAGGGTAT

upper sequence: GRMZM2G066485_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 8
gaaaaaaagaacacagaaaatagcatcaaatggattcag-actttctttataattacttattatcttggatgactttgaaattttgaattcatttttgcagATTTACATTCTCTTGTACAAGGAAGTTGCTCTTGCTTTGAAAATTAACAGCTTATACAGTAAACAGAGGCTACTTAACATTCATGAAAATGTTAAAGTTC
||||  |  |   | | |  |    |    |   || |  |       ||   | |   | ||    |||||    ||  | ||| |  | ||   ||||||||||||||||  | ||||| || |||||||||||||||||||| |||||  | |||||||||  || ||| |||| ||||||||| ||||| | ||| |
gaaatcattattcctgcatttttttttctttctgttgattatgggacctactttgatccactagaagggatgctggtgttaattt-atcttatgactgcagATTTACATTCTTCTCTACAAAGAGGTTGCTCTTGCTTTGAAAATCAACAGTGTCTACAGTAAAAGGAAGCTTCTTAGCATTCATGAGAATGTGAGAGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttataattacttattatcttggatgactttgaaattttgaattcatttttgcagATTTACATTCTCTTGTACAAGGAAGTTGCTCTTGCTTTGAAAATTAACAGCTTATACAGTAAACAGAGGCTACTTAACATTCATGAAAATGTTAAAGTTC
                                          ttcattttt  CT-rich tract
                            tttgaaattttgaatt  TA-rich tract