1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ccctttatccttaaacttgagtgtgtctagtatgtctggggttagatggatacaaggtatcgcacagtttgtactaatgatttacaattcccatctgtagGTTTTGTTGGGTATGCCATTCTTGCTGTCACATCCAGTTGAGTACATCTCAAGAGCATTCAATCTCGGTCGCGTGTTTATCCATTTCTG
species | Zea mays |
transcript | GRMZM2G066362_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAGCATCAAAGGAGTCTTCTTTGCCTTATTGGGAGCTGCTGTCGTACAG GTTTTGTTGGGTATGCCATTCTTGCTGTCACATCCAGTTGAGTACATCTCAEST: gi|78103804|gb|DV522232.1|DV522232
genomic: TGAGCATCAAAGGAGTCTTCTTTGCCTTATTGGGAGCTGCTGTCGTACAGgtacattgtt ... ccatctgtagGTTTTGTTGGGTATGCCATTCTTGCTGTCACATCCAGTTGAGTACATCTCA
EST: TGAGCATCAAAGGAGTCTTCTTTGCCTTATTGGGAGCTGCTGTCGTACAG GTTTTGTTGGGTATGEST: gi|76929771|gb|DV172155.1|DV172155
genomic: TGAGCATCAAAGGAGTCTTCTTTGCCTTATTGGGAGCTGCTGTCGTACAGgtacattgtt ... ccatctgtagGTTTTGTTGGGTATG
EST: TGAGCATCAAAGGAGTCTTCTTTGCCTTATTGGGAGCTGCTGTCGTACAG GTTTTGTTGGGTATGCCATTCTTGCTGTCACATCCCGTTGAGTACCTCTCAEST: gi|148950403|gb|EC895970.2|EC895970
genomic: TGAGCATCAAAGGAGTCTTCTTTGCCTTATTGGGAGCTGCTGTCGTACAGgtacattgtt ... ccatctgtagGTTTTGTTGGGTATGCCATTCTTGCTGTCACATCCAGTTGAGTACATCTCA
EST: TGAGCATCAAAGGAGTCTTCTTTGCCTTATTGGGAGCTGCTGTCGTACAG GTTTTGTTGGGTATGCCATTCTTGCTGTCACATCCAGTTGAGTACATCTCAEST: gi|50327840|gb|CO522966.1|CO522966
genomic: TGAGCATCAAAGGAGTCTTCTTTGCCTTATTGGGAGCTGCTGTCGTACAGgtacattgtt ... ccatctgtagGTTTTGTTGGGTATGCCATTCTTGCTGTCACATCCAGTTGAGTACATCTCA
EST: TGAGCATCAAAGGAGTCTTCTTTGCCTTATTGGGAGCTGCTGTCGTACAG GTTTTGTTGGGTATGCCATTCTTGCTGTCACATCCAGTTGAGTACATCTCAEST: gi|149078217|gb|EE166971.2|EE166971
genomic: TGAGCATCAAAGGAGTCTTCTTTGCCTTATTGGGAGCTGCTGTCGTACAGgtacattgtt ... ccatctgtagGTTTTGTTGGGTATGCCATTCTTGCTGTCACATCCAGTTGAGTACATCTCA
EST: TGAGCATCAAAGGAGTCTTCTTTGCCTTATTGGGAGCTGCTGTCGTACAG GTTTTGTTGGGTATGCCATTCTTGCTGT
genomic: TGAGCATCAAAGGAGTCTTCTTTGCCTTATTGGGAGCTGCTGTCGTACAGgtacattgtt ... ccatctgtagGTTTTGTTGGGTATGCCATTCTTGCTGT
atggatacaaggtatcgcacagtttgtactaatgatttacaattcccatctgtagGTTTTGTTGGGTATGCCATTCTTGCTGTCACATCCAGTTGAGTACATCTCAAGAGCATTCAATCTCGGTCGCGTGTTTATCCATTTCTG
tactaat putative branch site (score: 71)
ttcccatct putative PPT
taatgatttacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccctttatccttaaacttgagtgtgtctagtatgtctggggttagatggatacaaggtatcgcacagtttgtactaatgatttacaattcccatctgtagGTTTTGTTGGGTATGCCATTCTTGCTGTCACATCCAGTTGAGTACATCTCAAGAGCATTCAATCTCGGTCGCGTGTTTATCCATTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - tgtctgg