1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgaggcaaacctttccttcacatatgtttttggtgatagttttcttaccagtaattccatagaccatagtggagctaacattatgagcacgctctgcagGACAGAGTGGAAAACTAGAATGTTTGTCTGTGAAGGCGACAATAAAAAAAATGCCTTGTGATTTGCTGCCACGCTGAAAGCCCTGCTTCCATGGAAGACT
species | Zea mays |
transcript | GRMZM2G065044_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACACTCTTCACCCAATAGATGGATGCGGTTGACACATGAAGCAAAATCAG GACAGAGTGGAAAACTAGAATGTTTGTCTGTGAAGGCGACAATNNNNNNNNEST: gi|78025155|gb|DV493542.1|DV493542
genomic: ACACTCTTCA-CCAATAGATGGATGCGGTTGACACATGAAGCAAAATCAGgtactaatgt ... cgctctgcagGACAGAGTGGAAAACTAGAATGTTTGTCTGTGAAGGCGACAATAAAAAAAA
EST: TACACTCTTCACCAATAGATGGATGCGGTTGACACATGAAGCAAAATCAG GACAGAGTGGAAAACTAGAATGTTTGTCTGTGAAGGCGACAATNNNNNNNNEST: gi|89251797|gb|DY623583.1|DY623583
genomic: TACACTCTTCACCAATAGATGGATGCGGTTGACACATGAAGCAAAATCAGgtactaatgt ... cgctctgcagGACAGAGTGGAAAACTAGAATGTTTGTCTGTGAAGGCGACAATAAAAAAAA
EST: TACACTCTTCACCAATAGATGGATGCGGTTGACACATGAAGCAAAATCAG GACAGAGTGGAAAACTAGAATGTTTGTCTGTGAAGGCGACAATNNNNNNNNEST: gi|211206273|gb|FL472039.1|FL472039
genomic: TACACTCTTCACCAATAGATGGATGCGGTTGACACATGAAGCAAAATCAGgtactaatgt ... cgctctgcagGACAGAGTGGAAAACTAGAATGTTTGTCTGTGAAGGCGACAATAAAAAAAA
EST: TGATTCCTGGTCGTGCAAACTAGAAATCAAACGGCATCGAGCAAAATCAGTCATGCTTTATGTTTCACTTATAGTGTGTTTGGTTTGAGGAATAAAGTGATTCATCTTCTTCTCEST: gi|4966493|gb|AI691349.1|AI691349
genomic: TGATTCCTGGTCGTGCAAACTAGAAATCAAACGGCATCGAGCAAAATCAGTCATGCTTTATGTTTCACTTATAGTGTGTTTGGTTTGAGGAATAAAGTGATTCATCTTCTTCTC
EST: TACACTCTTCACCAATAGATGGATGCGGTTGACACATGAAGCAAAATCAG GACAGAGTGGAAAACTAGAATGTTTGTCTGTGAAGGCGACAATNNNNNNNN
genomic: TACACTCTTCACCAATAGATGGATGCGGTTGACACATGAAGCAAAATCAGgtactaatgt ... cgctctgcagGACAGAGTGGAAAACTAGAATGTTTGTCTGTGAAGGCGACAATAAAAAAAA
ttaccagtaattccatagaccatagtggagctaacattatgagcacgctctgcagGACAGAGTGGAAAACTAGAATGTTTGTCTGTGAAGGCGACAATAAAAAAAATGCCTTGTGATTTGCTGCCACGCTGAAAGCCCTGCTTCCATGGAAGACT
agctaac putative branch site (score: 15)
taacattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgaggcaaacctttccttcacatatgtttttggtgatagttttcttaccagtaattccatagaccatagtggagctaacattatgagcacgctctgcagGACAGAGTGGAAAACTAGAATGTTTGTCTGTGAAGGCGACAATAAAAAAAATGCCTTGTGATTTGCTGCCACGCTGAAAGCCCTGCTTCCATGGAAGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA