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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtgtcgttgtggaatgaaatctgatgaatggaactgcagattcgttgtcaatgcatgctcaaatgatgggctctgattcatgtgtctggacttgtacagCGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGGTTTTTACTGTCGTGACAAAG

Basic information

species Zea mays
transcript GRMZM2G064212_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76289472|gb|DV029040.1|DV029040
EST:     GACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAG                         CGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGG
genomic: GACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAGgtatgtgtgt ... acttgtacagCGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGG
EST: gi|71320080|gb|DR796795.1|DR796795
EST:     GACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAG                         CGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGG
genomic: GACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAGgtatgtgtgt ... acttgtacagCGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGG
EST: gi|60357858|gb|DN224831.1|DN224831
EST:     GACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAG                         CGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGG
genomic: GACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAGgtatgtgtgt ... acttgtacagCGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGG
EST: gi|89764485|gb|DY691273.1|DY691273
EST:     GACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAG                         CGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGG
genomic: GACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAGgtatgtgtgt ... acttgtacagCGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGG
EST: gi|71304474|gb|DR788354.1|DR788354
EST:     GACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAG                         CGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGG
genomic: GACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAGgtatgtgtgt ... acttgtacagCGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGG
EST: gi|88752742|gb|DY536883.1|DY536883
EST:     GACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAG                         CGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGG
genomic: GACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAGgtatgtgtgt ... acttgtacagCGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGG
EST: gi|60356331|gb|DN223304.1|DN223304
EST:     GACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAG                         CGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGG
genomic: GACATTGCACTGGATAACTTGGAGGCAGACACTTCCTCATACCACTGCAGgtatgtgtgt ... acttgtacagCGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcaatgcatgctcaaatgatgggctctgattcatgtgtctggacttgtacagCGTTGTCCGAGCCTTAGCTCTGGAACAAATAGATCCCTCCCTGGCTATTGGTTTTTACTGTCGTGACAAAG
                          ctctgat  putative branch site (score: 4)
                aaatgat  TA-rich tract