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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgccttcctatattcattcaatttaaatttaaaaatgtgccaaatgtgttctgttaagaatacatttctcgcctatctttgtatttccattcctttaatatattttagtttttttcccaattctcatcctatttctataagttttaaggctgtgttttttttcttgtttcagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGCTCAACTGTTCCAGGTATTCTGTGCACACTGCTGTCTGCTTGTGTTATTG

Basic information

species Zea mays
transcript GRMZM2G063851_T02
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063851_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 3'ss of exon 7
gtatatgccttcctatattcattcaatttaaatttaaaaatgtgccaaatgtgttctgttaagaatacatttctcgcctatctttgtatttccattcctttaatatattttagtttttt-tcccaattctcatcc-tatttctataagttttaaggctg-tgttttttttcttgtttcagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGCTCAACTGTTCCAGGTATTCTGTGCACACTGCTGTCTGCTTGTGTTATTG
                                                                         | | ||   ||||| |  |  ||  | |  || | ||   |||  | | |  ||| |  ||   ||||   |     |   | ||| |   | |||  ||||||||||| ||||||||||||||||||||||| |||||||||||||||  |   || || | ||||||||                                    
-----------------------------------------------------------------------gtttggcttcttttgtttaactgtttttcttgtaaacttggttttcctgttcttatttttgtcggcatttagctgctagtgtggactgataggtatttgtttgtttcagGTGCCAACCAAAGAGCAAGTTGATGCTCTATCAAAGGAATTGGCTAGTCGTTCGAGTGTTCCAG------------------------------------

upper sequence: GRMZM2G063851_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os11g33240.3 (Oryza sativa), 3'ss of exon 6
gtatatgccttcctatattcattcaatttaaatttaaaaatgtgccaaatgtgttctgttaagaatacatttctcgcctatct-ttgtatttccattcctttaatatattttagtttttttcccaattctcatcctatttctataagttttaaggctg-tgttttttttcttgtttcagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGCTCAACTGTTCCAGGTATTCTGTGCACACTGCTGTCTGCTTGTGTTATTG
                                                                      |  | |  || || || || ||  | ||  |  || | |  || | || ||     || ||| | | |  |||| ||| |   | ||| ||  | |||  ||||||||||| ||||||||||||||||| ||||| ||||||||||||||| || | || || | ||||||||                                    
----------------------------------------------------------------------tctttgtttacctgttatacttgtaatc--tcgattt-tcctattcttattt----ttgtcagcatttagctattagtgt--ggactgatgcgtatttgtttgtttcagGTGCCAACCAAAGAGCAAGTCGATGCTCTATCAAAGGAATTGGTTACCCGTTCGAGTGTTCCAG------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148974563|gb|EE025351.2|EE025351
EST:     GCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAG                         GTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC
genomic: GCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTCTTTTGACGGGGAAGgtatatgcct ... cttgtttcagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattctcatcctatttctataagttttaaggctgtgttttttttcttgtttcagGTCCCAACCAAAGAGCAAGTTGATGCACTATCAAAGGAATTGCTTGCGCGCTCAACTGTTCCAGGTATTCTGTGCACACTGCTGTCTGCTTGTGTTATTG
                                ctgtgttttttttctt  CT-rich tract
            tatttctataagtttt  TA-rich tract