1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...atgtaataatctagttttgacattaacatatttatgaatttcaaagtgaagcaatgaatcacatcattcatgcgctaataacgacttcttttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAACAGCAGTTAAGGGCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTC
species | Zea mays |
transcript | GRMZM2G063851_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|211507876|gb|FL228171.1|FL228171
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGEST: gi|149084983|gb|EE174493.2|EE174493
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTG
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|211059244|gb|FL131321.1|FL131321
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|21480820|gb|BQ577503.1|BQ577503
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: TGATCCAGAGGAG GGTATTCGTGTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGGCEST: gi|67013663|gb|CO442412.1|CO442412
genomic: TGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGT-TTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCC
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|149100799|gb|EE186893.2|EE186893
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|32868179|gb|CF007861.1|CF007861
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|211510237|gb|FL228184.1|FL228184
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGC-AAAAAGTGCTGCCAEST: gi|149014218|gb|EE043773.2|EE043773
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|211510240|gb|FL228187.1|FL228187
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|149105261|gb|EE290752.2|EE290752
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|93284646|gb|EB676910.1|EB676910
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: AGGGATGACTGGAATGCTTTTGGAAACATCCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCEST: gi|148991806|gb|EE033387.2|EE033387
genomic: AGGGATGACTGGAATGCTTTGGGAAACATCCC-TACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTC
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|148931316|gb|EC874179.2|EC874179
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|211510249|gb|FL228196.1|FL228196
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATEST: gi|78087725|gb|DV516118.1|DV516118
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAAT
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|211510246|gb|FL228193.1|FL228193
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: AGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCCAGAGGAG GGTATTCGTTTTAGGGGEST: gi|211507880|gb|FL228175.1|FL228175
genomic: AGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCC-AGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGG
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCEST: gi|148990704|gb|EE032108.2|EE032108
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCC
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|211507878|gb|FL228173.1|FL228173
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GGGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAEST: gi|71771089|gb|DR969026.1|DR969026
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|211507873|gb|FL228168.1|FL228168
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTTCA-TTCCAGAATGCCAAAAAGTGCTGCCEST: gi|211507875|gb|FL228170.1|FL228170
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCT-CAATTCCAGAATGCCAAAAAGTGCTGCC
EST: GAGGGATGACTGGAATGCTTTNGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGC-TCTCAATTCCAGAATEST: gi|148939431|gb|EC883987.2|EC883987
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAAT
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|67040702|gb|CO466957.1|CO466957
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|89758059|gb|DY687401.1|DY687401
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|149082974|gb|EE172211.2|EE172211
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|211505527|gb|FL228166.1|FL228166
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCEST: gi|211510238|gb|FL228185.1|FL228185
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGC
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAEST: gi|74035022|gb|DT535512.1|DT535512
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
EST: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
genomic: GAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCA
gtgaagcaatgaatcacatcattcatgcgctaataacgacttcttttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAACAGCAGTTAAGGGCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTC
taataac putative branch site (score: 367)
cttcttttctatcc putative PPT
ttttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtaataatctagttttgacattaacatatttatgaatttcaaagtgaagcaatgaatcacatcattcatgcgctaataacgacttcttttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAATGCCAAAAAGTGCTGCCAACAGCAGTTAAGGGCGGTGAACCTTTGCCTGAGGGTCTCCTTTGGCTTC
- - - - - - - - -tgacatt
- - - - - - - - - - - - - - - - - - - - - - - tgaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatgc