1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtcttaacaatgataggcaaaacatgtatttctgtctgtagcatgtgagctaatgtctgtttatgaattatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTTTTGCAAGGGCTCCTGAAGTATGACCCAGCAAGCCGTTTAACAGCACGAG
species | Zea mays |
transcript | GRMZM2G063792_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTTEST: gi|37387472|gb|CF630930.1|CF630930
genomic: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgtctta ... ttatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTT
EST: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTTEST: gi|40335781|gb|CK369851.1|CK369851
genomic: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgtctta ... ttatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTT
EST: GAAATTGTCCAGGCTTCAG AATCTGGTGATGCAAAATGTGGACCATGCTGCGGGAGATTTCATTGGTCTTEST: gi|7145535|gb|AW507016.1|AW507016
genomic: GAAATTGTCCAGGCTTCAGgtatgtctta ... ttatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTT
EST: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTTEST: gi|37385425|gb|CF629852.1|CF629852
genomic: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgtctta ... ttatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTT
EST: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTTEST: gi|60358819|gb|DN225792.1|DN225792
genomic: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgtctta ... ttatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTT
EST: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTTEST: gi|211519233|gb|FL430929.1|FL430929
genomic: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgtctta ... ttatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTT
EST: GCACCTCGCGGGAGAGCATGAAACCTGTGATGAAATTGTCCAGGCTTCAG AATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTTEST: gi|211114732|gb|FL311570.1|FL311570
genomic: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgtctta ... ttatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTT
EST: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTTEST: gi|12970020|gb|BG266774.1|BG266774
genomic: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgtctta ... ttatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTT
EST: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTTEST: gi|60398865|gb|DN231681.1|DN231681
genomic: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgtctta ... ttatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTT
EST: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTTEST: gi|33099166|gb|CF059126.1|CF059126
genomic: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgtctta ... ttatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTT
EST: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTTEST: gi|211367186|gb|FL433650.1|FL433650
genomic: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgtctta ... ttatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTT
EST: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAG AATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTT
genomic: GCACCTCGCGGGAGAGCATGAAAGCTGTGATGAAATTGTCCAGGCTTCAGgtatgtctta ... ttatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTT
catgtatttctgtctgtagcatgtgagctaatgtctgtttatgaattatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTTTTGCAAGGGCTCCTGAAGTATGACCCAGCAAGCCGTTTAACAGCACGAG
agctaat putative branch site (score: 3)
tttatgaattatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcttaacaatgataggcaaaacatgtatttctgtctgtagcatgtgagctaatgtctgtttatgaattatgaacagAATCTGGTGATGCAAAATGTGGACCAGGCTGCGGGAGATTTCATTGGTCTTTTGCAAGGGCTCCTGAAGTATGACCCAGCAAGCCGTTTAACAGCACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG