1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acatctagtaggtctgtaattgtgtgtccagtatcagtttgttagcaggcccaatacgtttgaagttatttctgacgtttctcccactggtgaaatgcagCCGTGAAAGGTTATTTCTGGCACTTGGCTTTGAGCTATTTGCTGTGAGTGACAATAAGTTCATGGGCATGTTTGTCCTGCCTGGGGCAGTTGATGGTATC
species | Zea mays |
transcript | GRMZM2G063737_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTGAAAGAAATGCCCCCTCTGCATTGAACTCTGGATTCTTAACACCATG CCGTGAAAGGTTATTTCTGGCACTTGGCTTTGAGCTATTTGCTGTGAGTGAEST: gi|94472670|gb|EB701628.1|EB701628
genomic: ATTGAAAGAAATGCCCCCTCTGCATTGAACTCTGGATTCTTAACACCATGgtatgtttaa ... tgaaatgcagCCGTGAAAGGTTATTTCTGGCACTTGGCTTTGAGCTATTTGCTGTGAGTGA
EST: ATTGAAAGAAATGCCCCCTCTGCATTGAACTCTGGATTCTTAACACCATC CCGTGAAAGGTTATTTCTGGCACTTGGCTTTGAGCTATTTGCTGTGAGTGA
genomic: ATTGAAAGAAATGCCCCCTCTGCATTGAACTCTGGATTCTTAACACCATGgtatgtttaa ... tgaaatgcagCCGTGAAAGGTTATTTCTGGCACTTGGCTTTGAGCTATTTGCTGTGAGTGA
caggcccaatacgtttgaagttatttctgacgtttctcccactggtgaaatgcagCCGTGAAAGGTTATTTCTGGCACTTGGCTTTGAGCTATTTGCTGTGAGTGACAATAAGTTCATGGGCATGTTTGTCCTGCCTGGGGCAGTTGATGGTATC
ttctgac putative branch site (score: 7)
aagttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatctagtaggtctgtaattgtgtgtccagtatcagtttgttagcaggcccaatacgtttgaagttatttctgacgtttctcccactggtgaaatgcagCCGTGAAAGGTTATTTCTGGCACTTGGCTTTGAGCTATTTGCTGTGAGTGACAATAAGTTCATGGGCATGTTTGTCCTGCCTGGGGCAGTTGATGGTATC
- - - - - - - - - - - - - - - - - - - - - - gcaggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctga