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gtatttctatatgcactgaattacagcattgcttggtgcatgcttgtgaatttagatgacacaagttttcttcaattgcagATTGGTGACCCAATTGAGGCACGGTACAAGGAGTCGACAGAAAGGGGTTCCTCTGTAGATCAACTGGTCTACTGCATCAACAGTTTCAGAGAGGCTGCTT
species | Zea mays |
transcript | GRMZM2G063676_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGGAAGATCTTACCAAG ATTGGTGACCCAATTGAGGCACGGTACAAGGAGTCGACAGAAAGGGGTTCCEST: gi|31355540|gb|CD439897.1|CD439897
genomic: CTGGAAGATCTTAAGAAGgtatttctat ... tcaattgcagATTGGTGACCCAATTGAGGCACGGTACAAGGAGTCGACAGAAAGGGGTTCC
EST: AGGATGAGACAAAGGGAGTCTATATTTCTAAACTGGAAGACCTTAAGAAG ATTGGTGACCCAATTGAGGCACGGTACAAGGAGTCGACAGAAAGGGGTTCCEST: gi|67029439|gb|CO458188.1|CO458188
genomic: AGGATGAGACAAAGGGAGTCTATATTTCTAAACTGGAAGATCTTAAGAAGgtatttctat ... tcaattgcagATTGGTGACCCAATTGAGGCACGGTACAAGGAGTCGACAGAAAGGGGTTCC
EST: AGGATGAGACAAAGGGAGTCTATATTTCTAAACTGGAAGATCTTAAGAAG ATTGGTGACCCAATTGAGGCACGGTACAAGGAGTCGACAGAAAGGGGTTCCEST: gi|211288523|gb|FL186989.1|FL186989
genomic: AGGATGAGACAAAGGGAGTCTATATTTCTAAACTGGAAGATCTTAAGAAGgtatttctat ... tcaattgcagATTGGTGACCCAATTGAGGCACGGTACAAGGAGTCGACAGAAAGGGGTTCC
EST: AGGATGAGACAAAGGGAGTCTATATTTCTAAACTGGAAGATCTTAAGAAG ATTGGTGACCCAATTGAGGCACGGTACAAGGAGTCGACAGAAAGGGGTTCCEST: gi|71307557|gb|DR789997.1|DR789997
genomic: AGGATGAGACAAAGGGAGTCTATATTTCTAAACTGGAAGATCTTAAGAAGgtatttctat ... tcaattgcagATTGGTGACCCAATTGAGGCACGGTACAAGGAGTCGACAGAAAGGGGTTCC
EST: AGGATGAGACAAAGGGAGTCTATATTTCTAAACTGGAAGATCTTAAGAAG ATGGGTGACCCAATTGAEST: gi|211288522|gb|FL186988.1|FL186988
genomic: AGGATGAGACAAAGGGAGTCTATATTTCTAAACTGGAAGATCTTAAGAAGgtatttctat ... tcaattgcagATTGGTGACCCAATTGA
EST: AGGATGAGACAAAGGGAGTCTATATTTCTAAACTGGAAGACCTTAAGAAG ATTGGTGACCCAATTGAGGCACGGTACAAGGAGTCGACAGAAAGGGGTTCCEST: gi|32856246|gb|CD995927.1|CD995927
genomic: AGGATGAGACAAAGGGAGTCTATATTTCTAAACTGGAAGATCTTAAGAAGgtatttctat ... tcaattgcagATTGGTGACCCAATTGAGGCACGGTACAAGGAGTCGACAGAAAGGGGTTCC
EST: AGGATGAGACAAAGGGAGTCTATATTTCTAAACTGGAAGATCTTAAGAAG ATTGGTGACCCAATTGAGGCACGGTACAAGGAGTCGACAGAAAGGGGTTCC
genomic: AGGATGAGACAAAGGGAGTCTATATTTCTAAACTGGAAGATCTTAAGAAGgtatttctat ... tcaattgcagATTGGTGACCCAATTGAGGCACGGTACAAGGAGTCGACAGAAAGGGGTTCC
cattgcttggtgcatgcttgtgaatttagatgacacaagttttcttcaattgcagATTGGTGACCCAATTGAGGCACGGTACAAGGAGTCGACAGAAAGGGGTTCCTCTGTAGATCAACTGGTCTACTGCATCAACAGTTTCAGAGAGGCTGCTT
ttttcttc CT-rich tract
aatttagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttctatatgcactgaattacagcattgcttggtgcatgcttgtgaatttagatgacacaagttttcttcaattgcagATTGGTGACCCAATTGAGGCACGGTACAAGGAGTCGACAGAAAGGGGTTCCTCTGTAGATCAACTGGTCTACTGCATCAACAGTTTCAGAGAGGCTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT