1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gagcaaaattttgacatgtactattaacgtatgtattattacagatccatctgttcctgtctcttgtttgtaatcgccaactgtttttcatatgttgcagGTGAAAGAAAGTGAGGCAGCCCCTTTGATCTCAGACTCTTTGAGCAAAGTTGAAAATGGGGGCGGTGTTGTTGATGACGAGCCTTTGAAGGTACCCATGT
species | Zea mays |
transcript | GRMZM2G063511_T01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTGCACAGTGGAGACCCAGCATAAGAACACTGAAGTCTCCCCACAGCAG GTGAAAGAAAGTGAGGCAGCCCCTTTGATCTCAGACTCTTTGAGCAAAGTTEST: gi|32932218|gb|CF037030.1|CF037030
genomic: TCTGCACAGTGGAGACCCAGCATAAGAACACTGAAGTCTCCCCACAGCAGgtacctttct ... tatgttgcagGTGAAAGAAAGTGAGGCAGCCCCTTTGATCTCAGACTCTTTGAGCAAAGTT
EST: TCTGCACAGTGGAGACCCAGCATAAGAACACTGAAGTCTCCCCACAGCAG GTGAAAGAAAGTGAGGCAGCCCCTTTGATCTCAGACTCTTTGAGCAAAGTT
genomic: TCTGCACAGTGGAGACCCAGCATAAGAACACTGAAGTCTCCCCACAGCAGgtacctttct ... tatgttgcagGTGAAAGAAAGTGAGGCAGCCCCTTTGATCTCAGACTCTTTGAGCAAAGTT
tccatctgttcctgtctcttgtttgtaatcgccaactgtttttcatatgttgcagGTGAAAGAAAGTGAGGCAGCCCCTTTGATCTCAGACTCTTTGAGCAAAGTTGAAAATGGGGGCGGTGTTGTTGATGACGAGCCTTTGAAGGTACCCATGT
tttttcat CT-rich tract
tttttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagcaaaattttgacatgtactattaacgtatgtattattacagatccatctgttcctgtctcttgtttgtaatcgccaactgtttttcatatgttgcagGTGAAAGAAAGTGAGGCAGCCCCTTTGATCTCAGACTCTTTGAGCAAAGTTGAAAATGGGGGCGGTGTTGTTGATGACGAGCCTTTGAAGGTACCCATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
-agcaaaa
- - - - - - - catgtac
- - - - - - - - - - - - - - -tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgttt